DreINT0000126 @ danRer10
Intron Retention
Gene
ENSDARG00000074221 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr11:5675536-5675944:+
Coord C1 exon
chr11:5675536-5675707
Coord A exon
chr11:5675708-5675812
Coord C2 exon
chr11:5675813-5675944
Length
105 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGA
5' ss Score
3.37
3' ss Seq
CTTTATGATTTGACTCACAGGTC
3' ss Score
7.85
Exon sequences
Seq C1 exon
CCCGGATTGAAGCTGAGCCAACAAATCTCATTCTGGGAGTTTCTATAAGAAACTTAGTCAAGATTTATAAAAAGGGGGCCAAGCTTGCTGTTAATCATCTTAACATAAAGTTCTACGAGGGCCAAATAACATCTTTTCTGGGTCACAATGGAGCTGGCAAGACAACCACAAT
Seq A exon
GTGAGAGCTAAAAAAATGAAGCATAGCAAATATATATTATTTCATTTGTTTTTGTCAAGCTTTAACTACTGCAACTCATTCAATACTTTATGATTTGACTCACAG
Seq C2 exon
GTCCATTCTAACAGGATTGTTTCCTCCTACCGCTGGTACCATATACGTGAAGGGAATGGACATTCGCTCAGATATGGACATCATCCGCAGGACTCTGGGTGTTTGTCCCCAGCACAATGTCCTCTTTGACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074221:ENSDART00000165385:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(18.6=46.6)
A:
NA
C2:
PF0000522=ABC_tran=FE(30.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGATTGAAGCTGAGCCAACA
R:
TCTGAGCGAATGTCCATTCCC
Band lengths:
242-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]