RnoINT0010359 @ rn6
Intron Retention
Gene
ENSRNOG00000012939 | Abca7
Description
ATP binding cassette subfamily A member 7 [Source:RGD Symbol;Acc:1303134]
Coordinates
chr7:12753108-12753691:-
Coord C1 exon
chr7:12753520-12753691
Coord A exon
chr7:12753240-12753519
Coord C2 exon
chr7:12753108-12753239
Length
280 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGC
5' ss Score
4.2
3' ss Seq
TCAGATCCCTGAACCCACAGGTC
3' ss Score
7.11
Exon sequences
Seq C1 exon
TTCTGGTGGAAGAGCCACCACCTGGTCTGGTTCCTGGTGTCTCCATTCGAGGCCTGAAGAAGCATTTTCGTGGCTCTCCACAGCCAGCCCTGCGAGGGCTCAACCTTGACTTCTATGAAGGCCACATCACTGCCTTTTTGGGTCACAACGGGGCTGGCAAGACAACCACACT
Seq A exon
GTGAGCTGCCAGCCACTATGCTGTCGTTCCCAGGCCTCAGTTTCCCCATCTATTCCCTAAGCACTGGGGTTGGAGGATTCCCAGGTGCACTGTGGAAGCAGGAACAGGGTCTAGTTTAGACACGCAGTAGGTTGAAGATACAGAGTCCTTGGGAGACCATTTCCCTCCCCTGTAAATGGAGAACACACAGCATACAGCCTGAGCATACAGCAGGTGCCCTGAGAGTGTAGGTGGCCGTTCTATCCATGAAGGGCCACTTCTCAGATCCCTGAACCCACAG
Seq C2 exon
GTCCATCTTGAGTGGTCTCTTCCCACCCAGTAGTGGCTCGGCCTCCATCCTGGGCCATGACGTGCAAACCAACATGGCAGCCATCCGGCCCCACCTGGGCATCTGCCCACAGTACAATGTGCTGTTTGACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012939:ENSRNOT00000064886:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.052 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(18.6=46.6)
A:
NA
C2:
PF0000522=ABC_tran=FE(30.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAGAGCCACCACCTGG
R:
AACAGCACATTGTACTGTGGGC
Band lengths:
292-572
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]