GgaINT0144854 @ galGal3
Intron Retention
Gene
ENSGALG00000002453 | ABCA7
Description
NA
Coordinates
chr28:2384773-2385204:-
Coord C1 exon
chr28:2385033-2385204
Coord A exon
chr28:2384905-2385032
Coord C2 exon
chr28:2384773-2384904
Length
128 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGC
5' ss Score
5.03
3' ss Seq
TGCCACCCCCTCCTCCCCAGGTC
3' ss Score
10.03
Exon sequences
Seq C1 exon
TGCTGGTGGAGGAGCCGCCCGCCCAGCTGCAGCCCGGAGTTTCCATCCGCAACCTGGTGAAGGTTTACCGCAGCAGCAGCCATGTGGCCATCGATGGGCTGAGCCTGGACTTCTACGAGGGGCAGATCACCTCCTTCCTGGGCCACAACGGGGCCGGCAAGACCACCACCAT
Seq A exon
GTGAGCTGGAATCTGGGAGTAGAAGCTGAGCCCCAGCACTGCCCCATCCCCACGCAGCTCCCGTGAGGGTGGGCTCAGAGCTTCCCGTGCACTCTGCCACCTCCACTTTGCCACCCCCTCCTCCCCAG
Seq C2 exon
GTCCATCCTGACCGGGCTGCTGCCCCCCACCTCCGGCACTGCCTACATCCTGGGCTGGGATATCTGCTCCGATATCGACAGCATCCGGAAGTCCATGGGGATGTGCCCGCAGCACAACGTGCTTTTTGACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002453:ENSGALT00000003869:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.118 A=NA C2=0.044
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(23.1=46.6)
A:
NA
C2:
PF0000522=ABC_tran=FE(37.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTTCCATCCGCAACCTGG
R:
GCACATCCCCATGGACTTCC
Band lengths:
242-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]