DreINT0000131 @ danRer10
Intron Retention
Gene
ENSDARG00000074221 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr11:5644116-5644469:+
Coord C1 exon
chr11:5644116-5644257
Coord A exon
chr11:5644258-5644341
Coord C2 exon
chr11:5644342-5644469
Length
84 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGA
5' ss Score
3.73
3' ss Seq
ATTTATTTTGTTATTTTCAGACT
3' ss Score
8.62
Exon sequences
Seq C1 exon
GTCATTTTCCTAACAAGGCGCTTCCTTCGGCTGGCACACTAGCATGGATTCAGGGCATTATATGCAATGTCAACAACCCCTGTTTTCATCAGCCTACAGCAGGGGAAACACCCGGGCTCGTGAGCAACTTCGACAACTCCAT
Seq A exon
GTGAGAAGTCTTTTTGTTTTATCTCAGACAAATTTCTTTTTTTTAACTTCAGCCATTGATGGAGATTTATTTTGTTATTTTCAG
Seq C2 exon
ACTTTCTCGACTTTTAGTCGATATGAGGACCGTCCTGACAATCAGTGGCAACCGAACAACCTTCTCTGGTCTTCAGGACCTGTCAAAGACAATCCAAAGACTCGGGGAAAGACCAGATGCCTGGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074221:ENSDART00000165385:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGCACACTAGCATGGATT
R:
GAGAAGGTTGTTCGGTTGCCA
Band lengths:
179-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]