DreINT0001835 @ danRer10
Intron Retention
Gene
ENSDARG00000082979 | BAZ2B (2 of 2)
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:HGNC:963]
Coordinates
chr9:52379685-52384124:+
Coord C1 exon
chr9:52379685-52379939
Coord A exon
chr9:52379940-52384057
Coord C2 exon
chr9:52384058-52384124
Length
4118 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGTG
5' ss Score
6.13
3' ss Seq
TGCGATTTATATATTTGTTGATC
3' ss Score
-1.82
Exon sequences
Seq C1 exon
ACTCTGACAGCAACTTAGAGAGTGATTCTGACGATGAAGAGCTGGACACAGATGTAGAAACGGACAGAGCGCCACTCAAACTCAGCAAATCCTCAGCATCTGTGCTAGACTCCTCCTACAACACTAGCCCCACCCCGCTCAATCTGCAAGTTCATAAGACCTCCATCGCAGCCACGCCCACCATTGTGACCAGCTCTGGGAATTCAGCCAATCACAATTCATCGTTCTCGCCTTACAGTGTGACCACACCCCCAG
Seq A exon
GTAGTGATTACTTCATTTCGACGGCAATGGTGCAAATACAGTACTGGACAGAAGTGCAGGATAATTACTATTATTTTAATGTTTTGAAAGAGGACTCTTATGCTTGATTCACACCAAACACAAAGAGAACATCGCGACACTTGCTCCAGATTATTTGCAGGATGTTTTTTTTTTTTTGCTTTGCACACATTTGTTTTATGAGCAGAAGATGCAATTGAGGTGAATGCTGCAAGTTTACCATACATTTAATGTCATTTGCACTGCCTGGTTGAATTTAGCCTTTATTTGTGGTTTGCATTAACTTTGTCATCTACTCGTGCAAATATTAAAATTAGAAGAGACCAAGAGAATATTTTTAACAAATTCATTCATTTTCCTTCGGTTACCACAGTGGAATGAACCAACAACTATTCCGGCTTATGTTTTATCCAGCGAATAGCCTTCCAGCCGCAACCCAGTACTGTGAAACACATTCATTTACACACACACTTATACACTGCAGTCAATTTATTCATTGATTAATTTTCTTTTTGGCTTCTTCTCTTTATTAATCTGGGGTTGCCACAGCGGAATGAACCACCAACTTATCCAGCATATGTTTTACACAGCAGATGCCCTTCCAGCTGCAACCCATCTCTGTGAAACATCCACACACACTCATTCACAAACATACACTACAAAAAATGCAGCTTACCCAATTCGCCTATAGCACATGCTTTTTAAGCATATGGGGGAAACCGGAGCACCTGAAGGAAACCCACGCCAACACAGGAAGAACATGCAAACTCCACACAGAAATGCCAACTGACCCAGCCATGAGATGACATTAGGTGAACTAAATTCACCGTTGTGTATCTGTGTGTGTGTTTGAATGTGAGAGTTTATGCGTGTGTCTTAGTACTGAGTTGCGGCTGGAAGTGCATTCCCTGCGTAAAATATATGACGGAATAGTTGGTGGTTCATTCTGCTGTGGTGACCCCTAAGAAATAAGAGACTAAGCCAAAGGAAAATGATTGAATGAATAAAAAATGAATGCTGTTTTTTTTTTTTACTTTCTAACAATCAAAGAATTCAGAAAAAGTTTATACAAAAACATTACACCAATAATGACGTCATGTTTAACCATAGACTGTAAAAGATATGGACTTAGTATCCGTGACGTTACCCATAGGTTTCTGAAGAACGCAAAAGAAGCTACAAGTAGGCGTGGCCATCCTTCGCCTTTTTTTCGTGCGTCATTGCACCAACCGGGGGATACCACATAAGGGCAAAGAGGTGGAACGTGAGTGGAGCTACAGATGCCTGCTAGCATTTTGCTTACCCAGGCTTTTCTTTGGGAGAAACGCTTAATGCTTCACAGTGTTTACTCCAGGATTTTTTCCAACTGTGGAGGCAGGGCTTTTTTTGACACAGATCTACTAACTACCTGCGGCGTTATTTCAATGACAAATGTCGTGAGCGCAGTATTAGAAGTCGAGATCGCATTTATGTAATAGCCTACAGCATGCGGATCTCTTTGCTTGCGTGCAGATTTCCTCTGCTCGTGCACAAAACTTCTTGCACGCCCTCAAATATAAGCCGCTTCAAGAGCGTGCAGATCTTGTGCGCTTTAAAATAAATGCTCCTAAAGTGTGATTTAGTGCGTTTATGTAACGAGTATGTCTTCAGCATTTATTAGATTTGCTTTGGAATATTTCTGAATGTCTCTAATAGACCTACAGAGCGATATTAATGCATCCTGAAGTAAAGTGAAACGGCTATATCATGTCGTGTTTGCTGGCCTCAGTCTGTCAGCACGTAACCTTAACGGGGTAAATAAATAATGCACAGCGCTACTACAGTTACAGAGAAGTTCGCTCTGTTATAATTCACTCATCTTTTAATACGTTTTGGTGCGATTATTTCCCGCTAATAAAAAAAATAAAATGTTTTGAATGAGAAGCTGTAATGTAGCCGTGGCAGGATGAATTTGGTCGTGGCGCCCCGCCATGGAAGAATGAATGTAGCTGAAACAATGCTTCATTACCTGCGACTCGTTTGTGTTCTGACCATGTGATTGGTTGTACACTTTATCAATAAAGTGTTTAGACTTTTAAAAACACTGCTTTAATACATTGAGCCACTGAGCATAGAGATGGTATAAGTATATTTCACTCACCTGACAAATAGAGGCCATGTGAATGTTTTGTGAGCACAATTAAGTGCACACAGCATGTCATATTATCTGATAATTGTAGGAAATAATTCCAAAAAGCAACTGACTGTGTAAAGAAACATAAAAGGCAACAAAAATATGATGAAAATGCAGAGTTCAGCGCAGGCACGTGCACACATAGGGCTCAACCTGTGCAGTTCACATGCCCTTTTTAGTCTTGGATAGAAAGTGCCCTTCCAAAATGATCAAAAGTGCCCTCGCGACACCCCCCTGCCCCTATACCCCCCATACCCCCCCTCCCCGCTCTTCAAAAATTTTCTTCTGCACATGCCCTTTGGACAGTCTCTGCACGGGCCTGGTTCAGCGTCTAATCAGCCGGAATCAGCTGAGGTGAAGTGACTGCGACCAGCGAGACTTAGCTGTCATTTAAGTGGCCACACCCTTAATTTTCTCACAGTTGTCATGGAGGGTAATATTAGCTATATGAATCAAAATCAATCTTTGTACCAGGCTGTAAACACTTTTTTTTCTGCTGTAAAGTTGGCCATTCTAACATTGGGCTGAATAGAAATGTGCTCTATATGGAGTTATGACTAGTGGATTTTCTATGAATTGCAGTTTCAATTCCTTCCGTATTTGCTTCACGAGGGAGAGTGGGAGGTTACCGCTTGTGTTAAATTGAAGGATTGAGAATAGCTGCTTAAAGTTGAACTTTGCGTGACAGAAATAAATGACACTTTAAAATATAATCACCTGGGGCCTCATGTGCTAAGACTTGCGTGGAAATCATACTAAAACATTGCGTACGCACAAAGCTGTAAATGTGCATACACAGAAAAAAATTCAGATGTATGAAACACTGCCTACGCCGAATCTCACGCAAATTCTTTTGTACATCTGAATGAACGTGAAACTGAGCGCAACATGCACGAGCACAAAACCCCTCCCTGCCTCCTCCCCCGTATGAATATGCAAATGACTCTACTTTGGCAAAACCCAACGAAAAAGCAAAGGCAAAAGCAAGCAAGAAGAGAAACTTTCAACAGAATGTGAATTGGAGGTGCCGCTTTCGGAGGTAGACCGGAGAAAAGCGGTGTTATTTGCAAATGTGTCCTCCGGAATTAACAACAAAAGAAAAAAATAGAGTGGGAGAGTTTAGCTGATGCTGTTAACACAGTTCTGAACATCGCACTGAGTGAATTAAAAAGAAATAGTGTGATTTATAGGCGTAAAATGTTGAAATACCTTAACAGTCTCAGTGGTGCAACTCGGAAAACGCATGTCATCATGTTTTGACACGTTCGAGCATGAACTCGGTTCGAATACAGCATCTGATGAAGTCATCCCCCCCACCCGCTACATATCCGATTTTACCAACTATTTATCATGAGAAAGACAAGTAGGAATCATTTATAATCTGTGCATCATATTTTATTTGCACATTTATTGAATGGAAATGTTTCTGATTCACGCATGCAAATTCACCTTCAGATAGTGTCTTTATAGAAATGTGCGTGCAGTAGATCGCTCAGATTACATTGGAAAAACAGGCGACTGCTGCAAATTGTGCTTTAATGTTTAGCTGGTCAACTGCATGGTATGGAAACCTTACATACCTGCTAGATGAACCCGTCTCATACAGCTGCCATTGCAAGGCTCAAAGACACTTTGTAGAGAGGAATTTAACACAACTGCCTCTAGGAGTCGCCAATGGAAATAAAACAGACACGCACAAAAAATGTGCGTACGCCAGCCATGAAGCTGCCGTGAAGCTGCGCACATTCCCACGTTCAGTTCATTGTTAGTAAATCCAAACGTGAGCGATTCTGAGCGTGAAACTTGGCGTACGCAAACTTTTTGTGCGTACGCAGCGTTGATACATGAGGCCCCTGGAATTTATTGTTAATTCTCAGTATTACTATATTTATTGTGTACTTGTTTCTTGCGATTTATATATTTGTTG
Seq C2 exon
ATCTGTCTCTAGGTAAAAGAAGAAGAGTCACAGATGAATCTGCATTACGAAAACCTCTAGAATATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000082979:ENSDART00000097149:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.965 A=NA C2=0.391
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0142914=MBD=PU(17.3=56.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]