GgaINT0050405 @ galGal3
Intron Retention
Gene
ENSGALG00000012579 | BAZ2B
Description
NA
Coordinates
chr7:38230273-38232627:-
Coord C1 exon
chr7:38232331-38232627
Coord A exon
chr7:38230334-38232330
Coord C2 exon
chr7:38230273-38230333
Length
1997 bp
Sequences
Splice sites
5' ss Seq
GTGGTATCT
5' ss Score
2.13
3' ss Seq
AATAAGAAATTCTTTTTTAGGCA
3' ss Score
4.75
Exon sequences
Seq C1 exon
AGTCTGACAGTAATTCCGAGTCAGATACAGATGGGTCTGAAGATGAAGATGATGAGGATGATAAGGATCAAGATGAGTCAGATACGGACACTGAGGGGGAAAAAACTCCACTGAAACTTAAGAAAACTGGTTCCTCCATAAAGAGCTCTTCCATTGGTCCTGTAGCTCATTCCACTCCGCTAAATCTCCAAGTAGCAAAGACCCCGAGCTCTGCACCATCTGCCTTATGTCCCGAGACCCAGCCTGCAGTTTTTCTTGGGACAACACCATCTACTCTTACACCAAGTTCACACTGTG
Seq A exon
GTATCTGAATGTCTTTTTATATAATACAGTGTAACACCTAAGTGACATGTATTGTAAAGGTACTTACCAGAAGTATTTTAAACACTGGTATCAGGTGATCTTTTCACAAGTGTTTGCAAAAGACCTTAAAATCATTCATCAGAATTGCAGGTACCTAGAAATCTAATGTTACACTCAGTCTAGGACATCTTAGTCCATGTAATTTTGTACTCGAGAGAAAGTAGGAAGTAGTAGTTGGATTTTATATTTATTATGCTAAAGTTCTTTATTGATTAGTCTTTATCGAACGTATTACTCTGAACTAGTAATTTATAAGATTGTAGAGATCACACAATTATTTTAAAAAGAAAAAAATATGGAAAAAACATAGCATTTTGCTGTTAGGTTGATAATCCTGTATTGGATAACTAACTGGAGTGATACAACTGCTGCAGAAAAGCCTGCATTTTTTTTGAAAGTCAGACTTCTCAATTTGCACAGTAACAATTAAATCAATTTGCATATTTACTGCTTTGAATTGGCGACTTGATATTTAAATAACACACAAGTGAAGTAAGTTTTTTAATTGCAACATCCACTCATAGACTGGTTTTTGTATTTCAATTCTGTAGAACAGAAATAAGATGCCATGTCATCAAGTACATTAGCTTTAAAGGAATGTGCAGTTGACTTCCTGTTTTTTCCATGAACAAGCAGGTGAATTACACAGGAAAAGATTTTGCATGTATTGAGGATAATCCACATTCTTAAAAGTACAAAGTTAATTTTGTTTCTCAGAAATTTGGGTTGCTTTATGATGCTTTTAAAAGGCTGGTGGATTTCTGTTGTTAGTTGTGGAGATGACAGGTTCAGTGTGTTTTTTTTTGTCTCCTTGTGTTAGGTTCAGTACTTTTTCTCCCTACGAAGAATGGCTATAACGCTATTAAAATACTCTTGTATTCATCTTACCTAACGGTAGTCAGTTGATAAAGAGGTGCATGGCCTCTTCTCTATATTTGACTTTCATTACACAGCTTTTTCTCGATTCACTTGTATTTGGATAAACAATTTTGCTCCCTCTACCATGACTGTTAGAGGTAATATGAAGGTCATGTTAGTTTAAGATAGCAGCAATGTGTCCAAGAAGTTTGACATCCAAGCATGGGCAGCTCCATGGTGTTTACTGAGAAGGACGCTAATAAACAGTTGCTTCTACATCTTCTAGTCATCTCCATTGGAAACCTGTGCTATTATGTCATGAAATACTCCTAACTGTGACAGTTTGGAGCAAGTTTGGAAGGTGTACTTTCTCATGTCCATTTACACAGGCAAGAGGCATGTCATGTTCTTGAAACAAAAGGTTCTGACAACCTTTTTGAGAAATGCATCTTTCCAAAATTTGTCTGGGTACATAGTCGCTGTCTCTGAAAAAAACTGAGGAAAAGTACCAGTGTTCAGCACTCTTTAAACCTCACATTTGATTTTCTTTTTCACTTATATTTTTTTATTCAAGTCTTGATTAGCACCAAGCAAAGCAAAAGGTATTTGAATTCTGCATAGCTGGAATAATTTTTCTACTTTTGGCAGTTGACCACAGTCTCATACAAAGTGCACTTTGAGGACAGAGTGTAGTCACACATGTGGTCTTAAAGTAAGGAATATCTGCTTTTTCATCTTCTGTATTGAAAAAGCTGTCTCTTATAGAATACAGGTGCTCATTATTATAGTGCATCTCCATATTACCTGACACAGATAAACAAGTCAAGCAGCTTAGCATAGCATGATTGCTTTTTTTGTTTGTTTGTTTTAGGAAAAAAAAGTTAAAGGAAAACTACGGGAAAAAGTATTTCCAAAGGGCAATAAGTTGCATTAATTTTCTTGGTGTTTTAGATACATAACATCTAGCATGTAAAAATGATTTAACTTTTCATTTCAGGATGTAAGTTTAAAGGTATAGCTCAGGAACTTGTTACTTTCTTTTTTGCAAGCTCCGGTGTTAATAAGAAATTCTTTTTTAG
Seq C2 exon
GCATCTCAAAGAGACGAAGAGTAACAGATGAACGGGAGCTGCGTGTTCCTCTGGAATATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012579:ENSGALT00000037699:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.996 A=NA C2=0.714
Domain overlap (PFAM):
C1:
PF0334410=Daxx=PD(53.5=76.0)
A:
NA
C2:
PF0142914=MBD=PU(24.5=61.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCGAGTCAGATACAGATGGGT
R:
TATTCCAGAGGAACACGCAGC
Band lengths:
342-2339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]