MmuINT0024138 @ mm9
Intron Retention
Gene
ENSMUSG00000026987 | Baz2b
Description
bromodomain adjacent to zinc finger domain, 2B [Source:MGI Symbol;Acc:MGI:2442782]
Coordinates
chr2:59796489-59798162:-
Coord C1 exon
chr2:59797878-59798162
Coord A exon
chr2:59796550-59797877
Coord C2 exon
chr2:59796489-59796549
Length
1328 bp
Sequences
Splice sites
5' ss Seq
CTGGTATCT
5' ss Score
2.7
3' ss Seq
CTGGCTGACTTCTCTTAAAGGTA
3' ss Score
8.26
Exon sequences
Seq C1 exon
AATCAGATAGTAATTCACAATCAGATTCAGAAGGCTCAGAAGACGACGAGGAGAAAGACCAGGAGGAATCAGATAGTGACACTGAAGGCGAGAAACCTGCCGTGAACCTGACCCAGACAAGCTCCTCTGCCAAAAGCCCTCCCTCCAGTCTCACAGCGCACTCAGCACCTCACCTCCACATAGGAAGCCCCCCAGGCTCTGCTCCTGCTGCCCTGTGCTCTGAGTCCCAGCCTCCTGCTTTTCTTGGCACTTCTTCTTCCACACTCACTTCAACTCCACACTCTG
Seq A exon
GTATCTACAGTTTATTTTTATCGATGTAACGTAACAGTCAGACTGCAGCAAGGATTGCTATTTGCACAGGTTTCTGGAGACAGTCTCGTTGTAATCATATACTGTGTCTAGATTTTAACCCCTGAGCCATCTCTCCAGCCCCCAAATTATTTATTTATTTCTAAGGGCTTTAGTGTTTTGCCCCTGGAACCAGAGTCACAGACAGTTGTTAAGCTGTCATGTGAGTGCTGAGAATTGAACCCAGGTCCTTTGGAAGAGCAGCCAGTGCTCTTAACCAACATCTAGATTTTAAATTGGCTAAGAAATGTGTATTTTAGAAGATTTAATCCATTGCCCGATATTTTAGATTTTTCCCCGTGATTTCTATTTTAAGATTATAATTAATAATCCCTCTTGATTTTTGAGTCCTTACGTTTTTAATGTTCATCCTTTAGTTTAGAATTTGATTTTTTTTTTGTGCTTTAGATGAAATTACTTGGACAACTAAATGCCCACATGCTCACTGTATAATCTAAATCATTTTTTGGAGTGAATGGCATTCTTAGTCAATAGCATATGATCTCTTTGTCTCTTTGATTTATTTAAAATTTGTAGGCATTTTCATTAAAAAGTTCCATTTAACAATCCAATATTGATACTCTGTATTCTCACTAAATAACTAAGAAAGCATGAGTTTATTTTGCTACTGTTTTGCTCAGTTTACTCTGATTGACATCTTCTAATCTTTGCTTTTATTTTCAATAATCAAGCATGATGTACTACTCATTTAATAAATGTTGGTATTTGTGAAGCCTATATTTTGCCTTTAAAATGTACATATAACCACAATCCTCTCCTGTGCGGTTTTAATTAATTAATTAGTTAATTAATTAAAGGCCTGGTACTGTTTTGGTCTATGGATATATATGCACATAGAAATTAAATTGTCTTTAACTATTTGAGCCAACCTTTAACATTTGTAGCAGCTATCTGAAAAGCCATAGGCTTCCAAATAAGACAGTGAATGGGATTTTGAAACCTGGCAGCTGTCCCATTCCTCCCTGCCGGCTTTCCTACTATTTATCAGTAGGGGAGAAGCTGCTGTGTTAGCGCTGCTGTGGTAGCGCTGCTGTGTTAGCGCTGCTGTAGAGAAAGCCTGGTGTCTGTCATAGGCCAGAAGGGGGAAACGTATCTTATGTAGTATGCTCAGCTGAAAAACAACTAGAGAGAGTGCATTTTTCATAACTGTACGAATAATCTATCATTAGAACATGTATGGAGTTTATGAATGATCATGCAGCTGTCCCTTGTACACTGAGCACTCATGTTCTGGCTGACTTCTCTTAAAG
Seq C2 exon
GTACATCCAAACGAAGAAGAGTGGCAGACGATCAGGAGCTGCGCATCCCTCTGGACTATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026987-Baz2b:NM_001001182:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0334410=Daxx=FE(53.4=100),PF104464=DUF2457=PD(41.9=59.4)
A:
NA
C2:
PF0334410=Daxx=PD(2.2=19.0),PF0142914=MBD=PU(24.5=61.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAATTCACAATCAGATTCAGAAGGC
R:
GCAGCTCCTGATCGTCTGC
Band lengths:
318-1646
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: