RnoINT0024845 @ rn6
Intron Retention
Gene
ENSRNOG00000056984 | Baz2b
Description
bromodomain adjacent to zinc finger domain, 2B [Source:RGD Symbol;Acc:1309801]
Coordinates
chr3:46026902-46028566:-
Coord C1 exon
chr3:46028279-46028566
Coord A exon
chr3:46026963-46028278
Coord C2 exon
chr3:46026902-46026962
Length
1316 bp
Sequences
Splice sites
5' ss Seq
CTGGTACCT
5' ss Score
4.11
3' ss Seq
CTGGTTGACTTTTCTTAAAGGTA
3' ss Score
7.02
Exon sequences
Seq C1 exon
AATCAGATAGTAATTCAGAATCAGATTCAGAAGGCTCAGAAGACGACGATGAGAAAGACCAGGAGGAATCAGATAGTGACACTGAAGGCGCGAAACCTGCCGTGAACCTGACTCAGACAAGCTCCTCTGCCAAAAGCCCTCCCTCCAGTCTCACAGCGCACTCAGCACCTCACAACCTCCACATAGGAGGCCCCCCAGGCTCTGCTCCTGCTGCCCTGTGCTCTGAGTCCCAGCCTCCTGCTTTTCTTGGCACTTCTTCTTCCACACTCACTTCAAGTCCACACTCTG
Seq A exon
GTACCTACAGTTTATTCTTATCGATGTAATGTGAAAGTCAGACTGCAGCGAGGATTGCTCTTTGCCCAGGTTTCTGGAGACAATCTCGTTGTAATCATATACTGTGTGTAGATTTTAACCACCGAGCCATCTCCCCAGCCCCCAAATAATTTACTTATTTTTAAGTGCATTAGTGTTTTGCTCCTGGAACTGGAGTCACAGACAGTTATAAGCTGTCATGTGGGTGCTGAGAATTGAACCCTGGTCCTTTGGAAGAGCAGCCAGTGCACTTAACCAATGTCTAGATTTTAATTTGGCCAAGAAACATGTATTCTAAAAGATTTAATCCATTGCCTGATATTTTAATTTTCCCCTGTAATATCTATTTTATGATTATAATTAATGATCCCTCTTGATTTTAATCCTTTTTCTATGTTCATCCTTTATTTTAGAGTTGAATTTCTGTGCTTTATATGAAATTACTTGGACAATTAAATGCCTACACACTCACTATATAGTCTGATTCCATTTTTTGAGTGAATGACATTCTTAGTCAATAGCATACGATCATTTTACATGTTTGATTTATTTAAAACTTGTAGGCATTTTCATGAAAAAGTTCCTGCATTTAACAATCCAATATTGATACTCTATACTCCCGTTAAATAACTAAGAAGGTATGGCTTTGTGTAGTAAAGTATTTTGCTACTGTTTTACTTACTTTTCTCTGATTGGCACTTTCTAATTTTTGCTTTTATTTCAACAAACAAGCATGATGTCCTATTCATTTAATATATGTTGATATTTGTGAAACCTATATTTTGCCTTTAAAATGCATATATAACCACGATCATCTCCTTTGCGGTTTTAATTCATCCATTAATTGATTGATTGATTGATTAAAGGCCTGGTACTGTTTTGGGTCATGGATATATAGACACATAGAAATTAAATTGTCTTTAAATATTTGAGCCAACCTTTAAAATTTGTAGCAACTATCTGAAAAGTCATAGACTTCCAAATAAGACAGTGGGTGTGTTTTTGAAAACTGCCGGCTGTCCTTTCCCTCCTTATCGGCTTCCTACTAACTGTGAGTAGGAGAGGAGCTGCTGTGTTACTGTTGTAGAGAAAGCCCAGTGTCTGTCAGAGGCCAGAAGGGGAAAAAAAACTTATCCTACTACTCTGCTCAGTAGGAAAACAACTAGAAATAATGCAATTTTCATAAATACACGAATAATTCACCATTAAAACATTTGTAAAACAATTTCTGAACGATCAGACAGCTAGCTGTCCTTTGTACATTGAGCATTTCATGTTCTGGTTGACTTTTCTTAAAG
Seq C2 exon
GTACGTCCAAACGAAGAAGAGTGGCCGATGACCACGAGCTGCGCATTCCTCTGGACTACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056984:ENSRNOT00000081302:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.996 A=NA C2=0.952
Domain overlap (PFAM):
C1:
PF041477=Nop14=PD(45.7=60.8)
A:
NA
C2:
PF0142914=MBD=PU(24.5=61.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAGAATCAGATTCAGAAGGCTCA
R:
GTAGTCCAGAGGAATGCGCAG
Band lengths:
334-1650
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]