RnoEX0014180 @ rn6
Exon Skipping
Gene
ENSRNOG00000056984 | Baz2b
Description
bromodomain adjacent to zinc finger domain, 2B [Source:RGD Symbol;Acc:1309801]
Coordinates
chr3:46026902-46031057:-
Coord C1 exon
chr3:46030457-46031057
Coord A exon
chr3:46028279-46028566
Coord C2 exon
chr3:46026902-46026962
Length
288 bp
Sequences
Splice sites
3' ss Seq
AGTGCTTCTTTACTTCCCAGAAT
3' ss Score
7.33
5' ss Seq
CTGGTACCT
5' ss Score
4.11
Exon sequences
Seq C1 exon
TAGTCCACCAGCACATCCAAAACTACCACTAGACAACAACCACCCTAATCCATTTTTGACAAATGCACTTTTAGGGAATCACCAACCAAATGGAGTCATTCAGAGCGTCATTCAAGAAGCTCCGTTAGCACTAACTACCAAAACGAAAATGCAGAGCAAGATTAACGAGAACGTCTCCACTAGCACCCCCTTCTCCTCACCTGTCAATCTGAGCACGGGTGGGAGGAGAACTCCTGGCAGTCAGGCCCCTGCGCTGCCCTCCGCCTCACCCATCCTGCACAGTAGCGGGAAGGAGAAGCGCGTCAGCACTGACGCAGCCCCGCTGAAAGGGCACCATCACCCCCATCCGGCAACGTCGTTGGTGGAACAGTTTAGAGGAACAGATTCAGACATTCCCAGTAGTAAAGACTCGGAGGATTCAAATGAGGATGAGGAGGAAGATGAGGAGGAGGAAGATGAAGAGGATGATGAAGACGACGAGTCTGATGACAGTCAATCAG
Seq A exon
AATCAGATAGTAATTCAGAATCAGATTCAGAAGGCTCAGAAGACGACGATGAGAAAGACCAGGAGGAATCAGATAGTGACACTGAAGGCGCGAAACCTGCCGTGAACCTGACTCAGACAAGCTCCTCTGCCAAAAGCCCTCCCTCCAGTCTCACAGCGCACTCAGCACCTCACAACCTCCACATAGGAGGCCCCCCAGGCTCTGCTCCTGCTGCCCTGTGCTCTGAGTCCCAGCCTCCTGCTTTTCTTGGCACTTCTTCTTCCACACTCACTTCAAGTCCACACTCTG
Seq C2 exon
GTACGTCCAAACGAAGAAGAGTGGCCGATGACCACGAGCTGCGCATTCCTCTGGACTACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056984-'23-26,'23-23,25-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.990 A=0.996 C2=0.952
Domain overlap (PFAM):
C1:
PF041477=Nop14=PU(53.5=34.3)
A:
PF041477=Nop14=PD(45.7=60.8)
C2:
PF0142914=MBD=PU(24.5=61.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCACCCATCCTGCACAGTA
R:
GTAGTCCAGAGGAATGCGCAG
Band lengths:
296-584
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]