HsaEX0007739 @ hg38
Exon Skipping
Gene
ENSG00000123636 | BAZ2B
Description
bromodomain adjacent to zinc finger domain 2B [Source:HGNC Symbol;Acc:HGNC:963]
Coordinates
chr2:159429200-159433363:-
Coord C1 exon
chr2:159432757-159433363
Coord A exon
chr2:159430863-159431156
Coord C2 exon
chr2:159429200-159429260
Length
294 bp
Sequences
Splice sites
3' ss Seq
ATGCTTCTTTTACTTCCCAGAAT
3' ss Score
7.99
5' ss Seq
CTGGTACCT
5' ss Score
4.11
Exon sequences
Seq C1 exon
ACCAGCACATCCAAAACAAACATTAGAAAACAACCACCCAAATCCATTCTTGACAAATGCACTTTTAGGTAATCACCAACCAAATGGAGTTATTCAAAGTGTCATTCAAGAAGCTCCTCTAGCACTTACTACCAAAACTAAAATGCAGAGCAAGATTAATGAAAACATTGCTGCTGCAAGTAGCACCCCTTTTTCCTCACCTGTAAATCTGAGTACAAGTGGGAGAAGAACCCCTGGCAATCAGACACCTGTAATGCCCTCTGCCTCTCCCATCCTGCATAGTCAAGGGAAGGAAAAAGCAGTTAGCAATAATGTAAACCCAGTAAAAACACAGCATCACTCCCATCCTGCAAAATCTTTAGTGGAACAATTCAGAGGAACAGATTCAGACATTCCCAGTAGTAAAGATTCTGAAGATTCAAATGAGGATGAAGAGGAAGATGATGAAGAAGAAGATGAGGAAGATGATGAAGATGATGAATCTGATGACAGCCAATCAG
Seq A exon
AATCAGATAGTAATTCAGAATCAGATACAGAAGGATCAGAAGAAGAAGATGATGATGATAAAGACCAAGATGAATCAGATAGTGATACTGAAGGAGAGAAAACTTCAATGAAACTGAATAAAACAACTTCCTCTGTCAAAAGCCCTTCCATGAGTCTCACAGGTCACTCAACACCTCGTAACCTCCACATAGCAAAAGCCCCAGGCTCTGCTCCTGCTGCCTTATGTTCTGAATCCCAGTCACCTGCTTTTCTTGGTACATCTTCTTCCACACTTACTTCAAGCCCACACTCTG
Seq C2 exon
GCACTTCCAAAAGAAGAAGAGTAACAGATGAACGTGAACTGCGTATTCCATTGGAATATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123636_CASSETTE4
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.957 A=1.000 C2=0.595
Domain overlap (PFAM):
C1:
PF027249=CDC45=PU(51.3=93.8),PF041477=Nop14=PU(46.8=89.2)
A:
PF104464=DUF2457=FE(52.7=100)
C2:
PF027249=CDC45=FE(16.8=100),PF041477=Nop14=FE(16.1=100),PF0142914=MBD=PU(16.0=57.1)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACACCTGTAATGCCCTCTGC
R:
ACGCAGTTCACGTTCATCTGT
Band lengths:
301-595
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development