GgaEX1010597 @ galGal4
Exon Skipping
Gene
ENSGALG00000012579 | BAZ2B
Description
bromodomain adjacent to zinc finger domain protein 2B [Source:RefSeq peptide;Acc:NP_990008]
Coordinates
chr7:36093410-36102634:-
Coord C1 exon
chr7:36102441-36102634
Coord A exon
chr7:36095468-36095764
Coord C2 exon
chr7:36093410-36093470
Length
297 bp
Sequences
Splice sites
3' ss Seq
GCTATAATTTTTCTTAATAGAGT
3' ss Score
6.18
5' ss Seq
GTGGTATCT
5' ss Score
2.13
Exon sequences
Seq C1 exon
GTATAAATGGATCACTGAATGGGAACAGTACCACTGCAGCATCTGCTATCAGCACATCTGTACTGTCCACTAGTATTGCAACATCCGCAGGGCAAGTGAAAGTGGTAACCTCAGGAGCAGGAGGCCGCAAATACAACCAGGAGCAAAACAAAGTTCAGCTTTTGGACACCAGAGCTGACAAAATTAAAGACAAG
Seq A exon
AGTCTGACAGTAATTCCGAGTCAGATACAGATGGGTCTGAAGATGAAGATGATGAGGATGATAAGGATCAAGATGAGTCAGATACGGACACTGAGGGGGAAAAAACTCCACTGAAACTTAAGAAAACTGGTTCCTCCATAAAGAGCTCTTCCATTGGTCCTGTAGCTCATTCCACTCCGCTAAATCTCCAAGTAGCAAAGACCCCGAGCTCTGCACCATCTGCCTTATGTCCCGAGACCCAGCCTGCAGTTTTTCTTGGGACAACACCATCTACTCTTACACCAAGTTCACACTGTG
Seq C2 exon
GCATCTCAAAGAGACGAAGAGTAACAGATGAACGGGAGCTGCGTGTTCCTCTGGAATATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012579_MULTIEX2-4/4=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.954 A=0.998 C2=0.750
Domain overlap (PFAM):
C1:
PF0334410=Daxx=PU(7.3=36.9)
A:
PF0334410=Daxx=PD(53.5=76.0)
C2:
PF0142914=MBD=PU(24.5=61.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATAAATGGATCACTGAATGGGAAC
R:
TATTCCAGAGGAACACGCAGC
Band lengths:
252-549
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]