DreEX6020957 @ danRer10
Exon Skipping
Gene
ENSDARG00000057782 | baz2ba
Description
bromodomain adjacent to zinc finger domain, 2Ba [Source:ZFIN;Acc:ZDB-GENE-070615-37]
Coordinates
chr6:11714988-11720407:+
Coord C1 exon
chr6:11714988-11715579
Coord A exon
chr6:11716878-11717159
Coord C2 exon
chr6:11720347-11720407
Length
282 bp
Sequences
Splice sites
3' ss Seq
CACGTTTTCCTGTTCCTCAGAGT
3' ss Score
9.4
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
ATCTTCGTCCACCTCGTCCTCCTCTGTTCTCCCTCTTAAGCTCAGCTCGGAAGTGTCAGGCAGGACCAAACCCCCCACAACCCAAAGCGTGTCCTCCAGTCTGCCTTTCTCTCATGGCCTGTTGGGTCTAAGTCAGCCCAACGGAGTCATCCAGAGCACCCAGGACGTCCCTCTGGCCCTCACCACCAAAACCCGCTCAGATGTGCCCGTCAACCTCAGCACTGGAGGCCGCAAGAGCCCCGCATCCGCGTCCCCCACTCCCAACCGCAGCCGCGAACCCCGGAAGACCAAGACTCCCAAAGCTCTGGAGGCCTGGAAGGGTCTGTCCCAGAACCACCTGGTGCAGTCACTGGTGGACCTGTTTCAGCACAGCGGAGCCGAGCAGGAGGTGCCTAGCAGTAAAGACTCAGACGATTCTGCTGAGGATGAAGATGATGAGGATGATGATGTGGAGGATGAAGAGGACGATGATGAAGAGGATTCAGATGACAGTCTCTCAG
Seq A exon
AGTCGGACAGTAATTCAGACAGTGAGATGAATGGCTCTGAAGGCACAAAAAAGAAGCGCAAGGATGCGAGCGCTGCGGAAATGGACACTGATGGAGAGAAGACTCCTCAAAAACTCAACAAGAGCCTCCTCAACTCCTCCACCAATCACAGCCTGTCTGACTGCCTGCCGCTAAACCTCCAAGTCGTTAAGCCCGCCAGTGTGGCCACACCCACCATCGTGAGCAGCTCCGGTGCCTATCACAGCTCTCCATCCTCCTCATACTCCGTTGGCACCTCTCCAG
Seq C2 exon
GCTCGGCGAAGAGAAAGCGAGTGATGAATGAAGATGATTTACGGATTCCGCTGGAAATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057782-'18-15,'18-13,19-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.970 A=0.968 C2=0.695
Domain overlap (PFAM):
C1:
PF031538=TFIIA=FE(50.0=100)
A:
PF031538=TFIIA=PD(3.8=15.8)
C2:
PF0142914=MBD=PU(16.2=57.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGGAGGCCGCAAGAG
R:
ATCACTCGCTTTCTCTTCGCC
Band lengths:
306-588
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]