GgaEX1010597 @ galGal3
Exon Skipping
Gene
ENSGALG00000012579 | BAZ2B
Description
NA
Coordinates
chr7:38230273-38234479:-
Coord C1 exon
chr7:38233870-38234479
Coord A exon
chr7:38232331-38232627
Coord C2 exon
chr7:38230273-38230333
Length
297 bp
Sequences
Splice sites
3' ss Seq
GCTATAATTTTTCTTAATAGAGT
3' ss Score
6.18
5' ss Seq
GTGGTATCT
5' ss Score
2.13
Exon sequences
Seq C1 exon
ACCAGCTCATCAAAAACTCACATCTTTGGAAAACAACCATTCTAATCCATTCCTGACAAATGCACTTTTAGGTAATCACCAACCCAATGGAGTTATTCAGAGCGTCATCCAGGAAGTTCCTCTTGCACTTACTACAAAACAGAAATCCCAAACCAAGATCAATGAAAGTGTAGCCATTGCTAGCAGTACCCCCTTTTCTTTGCCAGTGAACTTGAGTGCATGTGGGAAAAAAACAACTGGTAACCGGACACTTGTTGTGCCCTCTACCTCTCCTGTGTTACCTGGTTCAGGAAAGGATAAACCAGTCAGCAATAATGCAGTAAATGCAGTAAAAACACAACACTGCCTTCCGTCTGCAAAACTGGTGGTGGAGCAGTTCAGAGGGGTAGACTCAGATGCCCCCAGCAGTAAAGAATCTGACGACTCAAATGATGATGATGACGACGATGAAGATGAAGATGAGGATGATGAAGATGATGATTCTGATGATAGCCAATCAG
Seq A exon
AGTCTGACAGTAATTCCGAGTCAGATACAGATGGGTCTGAAGATGAAGATGATGAGGATGATAAGGATCAAGATGAGTCAGATACGGACACTGAGGGGGAAAAAACTCCACTGAAACTTAAGAAAACTGGTTCCTCCATAAAGAGCTCTTCCATTGGTCCTGTAGCTCATTCCACTCCGCTAAATCTCCAAGTAGCAAAGACCCCGAGCTCTGCACCATCTGCCTTATGTCCCGAGACCCAGCCTGCAGTTTTTCTTGGGACAACACCATCTACTCTTACACCAAGTTCACACTGTG
Seq C2 exon
GCATCTCAAAGAGACGAAGAGTAACAGATGAACGGGAGCTGCGTGTTCCTCTGGAATATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012579-'11-14,'11-13,12-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.730 A=0.996 C2=0.714
Domain overlap (PFAM):
C1:
PF0334410=Daxx=PD(30.9=50.0),PF0334410=Daxx=PU(45.8=31.9)
A:
PF0334410=Daxx=PD(53.5=76.0)
C2:
PF0142914=MBD=PU(24.5=61.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTCTACCTCTCCTGTGTT
R:
TATTCCAGAGGAACACGCAGC
Band lengths:
300-597
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]