BtaEX0005319 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020654 | BAZ2B
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:HGNC:963]
Coordinates
chr2:37044245-37047999:+
Coord C1 exon
chr2:37044245-37044848
Coord A exon
chr2:37046425-37046718
Coord C2 exon
chr2:37047939-37047999
Length
294 bp
Sequences
Splice sites
3' ss Seq
ATGCTTCTTTTACTTCCCAGAAT
3' ss Score
7.99
5' ss Seq
CTGGTACCT
5' ss Score
4.11
Exon sequences
Seq C1 exon
TTCACCAGCACATCCAAAACAGACATTAGAAAACAGCAACCCTAATCCATTCTTGACAAATGCACTTTTAGGTAATCACCAACCAAATGGAGTTATTCAAAGTGTCATTCAAGAAGCTCCTCTGGCACTTACTACCAAAACTAAAATGCAGAGTAAGATTAATGAGAACATTGCTACTGCAAGTAGCACCCCTTTTTCCTCACCCGTAAATCTGAGTACAAGTGGAAGAAGAACCCCTGGCAGTCAGACAACTGTCATACCCTCTCCCTCTCCCATACTGCATAGTCAAGGGAAGGAAAAAGCAGTTAGCAACAATGTAAACACAGTGAAAACACAGCCTCACTCTCATCCTGCACAATCTCTAGTGGAGCAGTTTAGAGGAACAGATTCAGACATTCTTAGTAGCAAAGATTCTGAAGACTCCAATGAGGATGAAGAGGAAGATGATGAGGAAGATGAGGAAGATGAGGAAGACGATGACTCTGATGACAGCCAATCAG
Seq A exon
AATCAGATAGTAATTCAGAATCAGATACAGAAGGATCAGAAGAAGATGATGATGATGATAAAGACCAAGATGAATCAGATAGTGATACTGAAGGAGAGAAAACTTCAATGAAACTGAATAAAACAGCTTCCTCTGTCAAAAGCCCTTCCATCAGTCTCACAGCTCACTCAACACCTCGTAACCTCCACATAGCAAAAGCCCCAGGCTCTGCTCCTGCTGCCTTATGTTCTGAATCCCAGTCACCTGCTTTTCTTGGCACACCTTCTTCCACACTTACTTCAAGTCCACACTCTG
Seq C2 exon
GCACTTCCAAAAGGAGAAGAGTAACAGATGAACGTGAACTGCATATTCCTTTGGAATATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020654_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.978 A=1.000 C2=0.714
Domain overlap (PFAM):
C1:
PF0334410=Daxx=PD(34.5=59.4),PF0334410=Daxx=PU(39.0=36.1)
A:
PF0334410=Daxx=FE(52.4=100)
C2:
PF0334410=Daxx=PD(8.0=71.4),PF0142914=MBD=PU(24.5=61.9)
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTCTCCCTCTCCCATACT
R:
TCCAAAGGAATATGCAGTTCACGT
Band lengths:
297-591
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development