HsaINT0016819 @ hg19
Intron Retention
Gene
ENSG00000123636 | BAZ2B
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:963]
Coordinates
chr2:160285711-160287667:-
Coord C1 exon
chr2:160287374-160287667
Coord A exon
chr2:160285772-160287373
Coord C2 exon
chr2:160285711-160285771
Length
1602 bp
Sequences
Splice sites
5' ss Seq
CTGGTACCT
5' ss Score
4.11
3' ss Seq
CCAATTGAATTTTTTTAAAGGCA
3' ss Score
4.78
Exon sequences
Seq C1 exon
AATCAGATAGTAATTCAGAATCAGATACAGAAGGATCAGAAGAAGAAGATGATGATGATAAAGACCAAGATGAATCAGATAGTGATACTGAAGGAGAGAAAACTTCAATGAAACTGAATAAAACAACTTCCTCTGTCAAAAGCCCTTCCATGAGTCTCACAGGTCACTCAACACCTCGTAACCTCCACATAGCAAAAGCCCCAGGCTCTGCTCCTGCTGCCTTATGTTCTGAATCCCAGTCACCTGCTTTTCTTGGTACATCTTCTTCCACACTTACTTCAAGCCCACACTCTG
Seq A exon
GTACCTACACTTTATTTTTATTATTCTAAAGTAGAAGTCAAACCATAGCAAGAATTTTTATTGATAAGAGTGTTCTGGAGATGATCTCACTGGAATCAAGATTAAAGTTAGATTTTAGGTTGGCTAAGGAAGGTGAGCCTGTATTTTCAAAGGATATGACTCATTACCTGGTCTTTTTTTTCCCCCCGAGTTTCCAGTTTAAGGATCTGATTGATGATAGTTCCTTTGGTTTTGAACCTTTCTGCTTTTGTGTTCAGTTTGTGCTTCTAGAATATAGAATTTAATTGACAGTTGGACTTTTTTGTACAGTTGACCCTTGAACAACGCAGGATTTAGGGGCACTGGCCCCACACACAATCGAAAATCTACATCTAACTTTTGGCTCCTCAAAAACTTAACTGTTAGCCTACTATTGACCAGAAGCCTTACTGATAACATGAATAGTCAATTAACGTATGTTGTATGTGTTATATACTGTATTCTTACAATAAAGAGAAAAGAAAAATGTTAGTAAGAAAATCATAAGCAAGAGGAAATATATTGACTCTTCATTACCTGGAAGTGGATCATTATAAAGATCTTCATTCTCATCTTCATGTTGAACAGGCTGAGGAGGAGAAGGATTGGTCTTGCTGTTTCATGGGTGGCAGAGGCGGAGGAAAATCTGAATATAAGTGGACTCACACAGTTCAAACCCATATTGTTCAAGGGCCAACTGTACTTTATAAAAAAGCTCACTTGGTTACTTAAGATGCTATCTGCCCAATATATAGCCAGTGTCTTTTCTATTAGAGAGTAGCATTCTTATTCCATTAACGTGCCATGTCCTTTTTTTTCCCATTTGACTTTTTATAAATTCCTAGAGGTCTTCATTAAACATTTATACACTTAATATTCCACAACTACTCTCAGTTCTCATTCAATGTCTAAGAAAATATAGATGTATATAGTAAAATATTTTGTTGTTTTACTTATTTCACTCTCCTCTTGTCAGTTTCTAGCTTTACTTTCATTTACCACATACCAATATGATAGCCTACTAATTTTAGATGAACTTATTTGTGTTTGTGAAACTTGATCTCGGTCTTAGAAAATTTTTACATAAAATCATAATCCTGTTCCTTGGTGGCTTAGGTTAATTAAAAGACCTGGTAGTGTTTTTGACTATGGATTTATATGGACATAGAAATTAAATCGTCTTTAAATATATGAGCCAGCTGTTGAAATTTTTCAGCATCCAAAAACTCCTATTTTCAAAGTCAACAGTTTAAATAGATTTTCTGAAACCTCTATTTCTCTCCTGCTTCTCTAGCCATTTCTTTAATAATAAAATGAGAGGAAAGGTGTATATTTTTACCTTGGATTGTATTTTCTTTAGAGAGAAAAACTAGTTATCCTGTCATTCAGACCCAAAAGAAGAAAAAAGCCCCCTGCCTTATACAGTGTTTTATTGAAAACCATCTAAAAATAATGTATAAATTACAGAAATACACTAAATCCAAGTTATTAACATATACTTTTTTAAAGAAAAGTTTCTAAACTATCAATATTATTATTTATATTAATGAATGTTTTATATTAACCAATTGAATTTTTTTAAAG
Seq C2 exon
GCACTTCCAAAAGAAGAAGAGTAACAGATGAACGTGAACTGCGTATTCCATTGGAATATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123636-BAZ2B:NM_013450:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.605
Domain overlap (PFAM):
C1:
PF104464=DUF2457=FE(52.7=100)
A:
NA
C2:
PF027249=CDC45=FE(16.8=100),PF054707=eIF-3c_N=FE(13.1=100),PF041477=Nop14=FE(16.1=100),PF032479=Prothymosin=PD(21.1=71.4),PF0142914=MBD=PU(16.0=57.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAATCAGATACAGAAGGATCAGA
R:
CCAATGGAATACGCAGTTCACG
Band lengths:
334-1936
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)