DreINT0005003 @ danRer10
Intron Retention
Gene
ENSDARG00000061717 | CABZ01075242.1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E7F4K6]
Coordinates
chr9:5326920-5328002:+
Coord C1 exon
chr9:5326920-5326986
Coord A exon
chr9:5326987-5327935
Coord C2 exon
chr9:5327936-5328002
Length
949 bp
Sequences
Splice sites
5' ss Seq
AAGGTATAT
5' ss Score
7.84
3' ss Seq
TGTGTTTTCCCTCCATACAGCAA
3' ss Score
10.07
Exon sequences
Seq C1 exon
GTTGGAAACAGTCAGTGGGAGTGTCATGAAGAGGATTGAATTAGAGAAAAAGATGCACTATCTTAAG
Seq A exon
GTATATATTTTTGGATAGTTTTTTTTTATGTGTTGCCACCCTAGAATTATAAGGTTTTACCTGACATTTTTGTCAAAATTGAGTTATTGACATATTCTTATTAAATGACAACTTATTTACATAATGGGATGGTTTTTTTTTTGTTTTTGTTTTTTTTAGAAGTTGTTTACATTTTAAGACTTTTTATTCAAAAAAAAAAAAAAAAGTGTTACACACATACTGTTTGCTATATGGAATGCAAAAACTTTGAATCTCAATATCTCAACATCTTTCAGAACGCAGATAGAACTTTAAAATTCCAAGGTGATGGTGTGTATGTCTTCTCAGTGCTTAAACCTTACTTAGAAAGACATTACATAACTGATAAATTCCAAGCAACCTGTTTAGCATTCACCTTAACTATGTACAGTGCTGACCATAAATATGTACACCCCTCACAGATCTCCCTTTTAATTTAATATCATGTATAGGTTGCTCTAAAATATTATCTTTGTGCATACATAGTAAATTAGTCAAAGCCTCATCATTGCCAAAGCCTAGGTTGTAACTAATCCTAAAAAAAAAATATTAAAAATAAACTTAAGATCAAAAATTAAAATTTTGGAAAGAAAAATATTTAATGCAGTTTTAATAAAGCAAAATTATTATTATTTTTTTTCAAATGTAGTTGAAATAGTTTTTTTTTTTTTTGCAACTCTTTAAATGTAATTGAATTTAAATGTATAACAAGACAATTTTTCACTGTAAAAGACATAAAAAATTACTTTTCAAAAGGGGAGTCCTCATTTAGCTGAGCACTGTATTAACGTACTAATTTACCAGAATGAATGAATGCAGAGTATGTGTTACCATCAGTGCTGAGGGATCAAGATAAATGCTGATAGGCATAGTGATTTACCAGAATGACTCATAGATGTTGATCTCGTTTCTGTGTTTTCCCTCCATACAG
Seq C2 exon
CAAACTCTTCGTGAGAAATGGGTGGAACTGCAATCTCTCACACTCAAAGAAAAACGCCTTACTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061717:ENSDART00000088342:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0059519=PDZ=PD(4.6=17.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]