MmuINT0045571 @ mm9
Intron Retention
Gene
ENSMUSG00000026832 | Cytip
Description
cytohesin 1 interacting protein [Source:MGI Symbol;Acc:MGI:2183535]
Coordinates
chr2:57990270-57997617:-
Coord C1 exon
chr2:57997548-57997617
Coord A exon
chr2:57990337-57997547
Coord C2 exon
chr2:57990270-57990336
Length
7211 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACT
5' ss Score
9.01
3' ss Seq
CTCCCTTATCTTTCTCACAGCAA
3' ss Score
9.79
Exon sequences
Seq C1 exon
GATAGAGACTCTTAATGGAACAATGATTCACAGAAGAGCAGAACTTGAAGCAAAACTGCAGACTTTAAAG
Seq A exon
GTAACTTGACTTAACACAGCACGTCAGTTTTCATCCATGAATGTGTGAGTAGAATAATGATCTATCTTGAAAACTGAGATAGCCCTTGAAGGGGAAATGTCAGGATGCATCTAAGCTACCGACGGGTCAAGGACCACAGAATTACCTTTGTAGGAATATCTAAGACTGTGAAAATGTGTAAATCACCCTCTTCCTTCCCCATTCAGAGTCTATGGGGCTCAGAAAGCCAGCGGGACGGCATATTACCTGAAGAGCTAGTCATTGACGCACCTGTGATCACTCTTGATTTACATTTTGTTGAAGGAGCAAAACAGAGGAAGAGGTAGCCTTGAGTGCTGCAGAGAGCTGGCGGGCCCACACTTCTGCTTTCCCAGTCTCCTTTGCCTCTTTTCCTTCTGCGCCATTCTGAAAATGGACTATCTACCACTAACACTGTGGCTGTCCTTGAATCCGCTTTCATGGGCAAACACATTACTACCTTGAAAGGGAAGGAAAAGGTCACAAGGGACAGTGCCTAAAGCTCAGGATGAATTCTCTGGCATGCCTCTTTGAAGGTTTTCAAAATTTCAGTTCTCTATGTTGGTGAGCCTTCCAGGCTATGCACTCCAGACACTTCTGGAGTGAGTTTGAAGGTGCTCTGACTCCTCCCAGTTTCCAGTACTGTCCCCTGCAGGACAATGAAGCTGCCAGCTACTCGGAGATAGCTTGACTACAGGCAAGCAACTTACTTGTATTTGGTAACAGTCTGAATTCATTACTTTTTCTCATGAAATACACTCATAAATTACTGATTTCAAGAGGACAATTCACTGTATTTACATTTTATCAAGAACCTTTCCCTCCTACCATATTTATTCACTAGCAAGCCTCACTAATATTACCTTTGATACTTTTGACATAGTGCCCATTCCCCATGATTTTTAATTTCTATTTAAAATAAAATCATTAAGAATCCCTTCTATCCAAACTTTGATAGGAATTAAAGTTTGTTTATAAGATAAGTGAGAACAGTTGAAATCTTTGTGGCTCTCATTTGAATATGTTTTTCATTTTTATTTAGCACTTCATATACTCTAGAATAATTTTCTTCATGTGTTTTCGAATACATTCTCTAGCTAAAGAAGGATAATCCTTTTTATTTTAAGTTTTGCCTTTTAGCTCAGTTATTCATCTAATTTACTTTTCTTCTCTTATAGCATTGGCTAGGATCTTCAGTCTATTGTAAACTGTTGTATTACTCGTGACTTAAAGGACTGCTTCTGAAATCTATATAAAATTTCAATATCTATATTCTCTTCTAGAATATAAGTAGGTCCTTAGTATACTTTGAATGTCTACTTAAGAACTCATCTTCCCGACTCTTATTTACTACAGAGCATTTCATCAATTAAAACATATATAACAAGAGATGTTATTATAAACAACAAGAAACAAAAACATATACTAATGTGGTCCACTGATGTGTGTGCATTGCCCCTTCATTCAACTCTCCTCTGTGGGCCTTTGTTATTACTGCATAATATTTCATTAAATGATGATAACTAAATCTTTCCAGAATAGTCCTTATATTTCTTTGCTACTTTTGAAGAAGTGTCTTCTAGGTAATTGAAAGTATTTTGGTTTATGGGATCCAAGTTTTGTTTCCCTACTTTTGTGGAGACTTTTTATTTATTTGTTTATAAAAGAACTTCTAAATATGGGTCAGTTGTCAGTCATCTACATTAAAACATTTTTCCTAAAAATTTAGTTTTTTTCCTTTTTCATATTGAAGTCTTTAACTCATCCAGAGATATTCTTGTCATATACTATAAAGTATGGGATAATTTGAGTTTTGTCCATGCGCACAGGCAATTCTCCCAGTATAATTTCTTTTGTGCTTTGCCTTTCTCCGCACCTGACTTGCTGTGAAACTCTTATTTTAACAAAGTCTCCATGTAAGTCCACATTTGATCTCAGACTCTCTAATATGGCCATTTTGATTTTTATCTCCAACTCAGTTTGCAATAGAGAGTGATACCTAACTGAGCAATGTTCTTAGTCTGTTGATCATCTGTCAAATTGTCAAGTTCCATGAGAAAATGCAAGAGGTTTGATTGACATTTCATTTTATATAGATAACTCAGTGCCTCAGGTATTAAATATTACATGGTATTTCATTTTCTTGCTGCTAGGTTTTCTTAACCATTTTTGCTGTTGTTCTTTTCATCTTTCACAAAACCTGATAATTTACACATACAGGTCATATTGGGTTTTTTTGTTGTATTGTCCTTTGTACTTTAGCATTTTATTATAGTTTTTTTTCTAGAGAAATATATTTTATGGTTAGAGAATAGATATTCATAGATTGTTTGTATGCTGTTGATAATAGTCAAGCACTTTGTTAAACCACATAATATCTACCAAGTTGTTTGTATGTTATTTGGAGTGCTCTACTAGGATAATAACTGGACAAAATGGATCTAGTTCCCTTCTCTGCTGGGCCGTCTTGGTGAGGACTGTGCTTAAGGTGAGGGAAATAATCTTGCACCCTTACTTTGTCCTTTAGTGGGTCTTTAGGCTCTTTCACTTTCTGAGGCACTGCCAGACTGAGTTCCAGAGTGGTTGTACCAGTTTGCAATCCCACCAACAATAGAGGAGTGTTCCTCTTTCTCCACATCCTCACCAGCATCTGCTGTCACCTGAGTTTTTGATCTTAGCCATTCTGATTGGTGTGAGGTGGAATCTCAGGGTCGTTTTGATTTGCATTTCTCTGATGACTAAGGACTTAAGGACTTTGAACATTTCTTTAATGGACATATGAGATTCTTCTGTTCTGAATTCTCTGTTTAGTTCTGTACCCTATTTTTTAAATTGCTTTATTTATTTTTTATTTTTTTATTTTTGGAGTTTAACTTCTTGAGTTCTTTATGTACTTTGGATATTAGCCCTCTGTCAGATGCAGGGTTAGTAAGGGTTTTTTTCCCCCCAGTTTTGTCCATTTTGTCCCATTGAGTGTCCTTGCCTTACAGAAGCTTTTCACTTTCATGAGGTTCCATTTATCAATTGTTGATCTTAGAGCCTGGGCTGTTGGTGTTCTGTTCAGAAACTATGAGTTCAAGGCTTTTTCCTACTTTCTCTTCTATTAGATTCAGTGTATCTGATTTTATGTTGAAGTCCTTGACCCACTTGGACTTGAGTTTTGTGCAAGGTGATAAATATGGGTCTATTTTCATCAGTCTACATACAGACCAGCAGTTAGACCAGTACCATTTGTTGAAGATGCTTTCTTTTTTATACTGTATGTTTTTTACTTCTTTGTCAAAGATCAAGTGTCCATAGGTGTGTGAAAATAGCCTTGAATGACCTACATATTTGTTTCTAAGGCTCCCTTTTAGGTTTAGTGTTAAGTATATGACATGAGCTAGGTTGTTCCTCTTTTTAAAACTCTGGTAGAATTTTTGTAATACCATCTGAATCATCAGGACTTGGGGTTCTTTCTGGGGGGAATATTTTCAAACCATGGCTTTAGTTCTTTATTATTAGTAAAGCTACTCAGATGACTTTCTGGAGCAGTTTTAGTAAGTTCTGTGTCTGTCAATAAAGTATTCTAATTTTCAAATATATTTATATAATTGCCTGATTGCCTGTAAAACTTCCATTCTTAAACTTTAATCTCTTCTATAGCTGTCATTTTAATCCTTGTTTTAACTTATTCTGTTCATGCTTTCTTTTTACCTTCCTGTTGACTTTCTAACTACATTATCCTCCCTCCATGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCACTCACGAGCGTGCAAGTGCGTATTTATGTACATGCCTGTGTGTCTTTCCCTCTGTTTCCTGACTACTTTTTACTACAACTTAATAAGGTCCAGACTCATACCTCAATTCATACTGTCTAGATTTGGCTCTGATCTTTATATCTATAGACATGTGACTCTGGCTCTGTGTACTGTCTTTATTACTTCCCACATTATCTTGTGGACTTCCATTAGAAATATGTTAGGGACTTTTGATTTGCCTTCCTTAATAATGACTTCAGTGGCATCCTTGTTACCTGTATTCCATATAGAATGTGTTCTTTCTAATGAGCTTTTAAATGTGATTTATACTTTATTGACAAGAGGCTCTTTTTTGTAACTGTCTGTTCATATTTCTCTAAACATTTTTGTGCTTATGAATATTGGTTTTTATCTTTCCATCAGAACTTATTGCACTCTTATTTTGGTGCCTGTTTTGGATTCTTTTTGTTTCTGTGTTGCTGGGAGAGATCTATGCCTTGATTAGCAGCTCACTGTCTTTCCTGTCACTGAGCACCTGAGGATGCTGTGGACTTGAAAGTTAGCTTCATCTCCATGGGATGGCTGTGCAGAGCCCTCCACACAGGGCATCAAAGCTTCCCCTCCAGGTCCAGGTCCAGCAGCTTGGCTGCCTTTCTCAGAGAGCAAATGCCCAGTGTGGCTCAGGTCCTGAAGCATTGCTGTGCTTCTGTTTGCCAAGATGCCTCCAGCTATAAGCAGCTTTTATCCGTCTACTTTTCTTAGTACCTGTTATTCAGTCAGGGTTTATTTCTCAACAAGGACATTTAGCTGAGTTCTTAGTATTAAATAGACAATTTGAAGACACGTATTACCTCAGACTCTAAATTCCTAACTAACACTTGATGCTTCAACATGACAGCTCTTGAAGTTCCATTCTGTTTACCACCTCATATTTATGTCTGACAAGCAGTCTTGGAATTATGGGATAAGTACTTAATCCCTCAGGGCAGAAATGACTAGGTCTGGCCTAAAGGCAGGTTGATTTCCCTTTTGCGTGATGACATTTATTTTGCATCCTATATATGTGAGCATTCTATTCACAAAGATGCAAAGACTGTGCAGAGCCCCAATCTCTTTGCTGGAGGAATTTTGTCCTTTCTGACTACAGGATTTCCTTTATCTTGGCCTATGCTTCAGATGCTCAGCACAGATAGTGAACTCGTTGAAAGAGCTACTTTTAAATGTATCTCTGTTACTTGATAGGCCTATTATATACTTTGAGAAGTATTTCATTTCAATGAAATTTTATTTTCTAACCTATAACAAAGTTATGAAAATTAGATGACATATTATCCGTAAGAGCAAAATAAAAAGATTAAGTGCTGGTATACTTGCTATTTGTCTTATGTAGAATGAAAATCCTGGAGCCATACCTGGAACCAATTCACCATGTTACAGCTTAGGGTTGTTTAAAGAAGCCGTTTTTTGTGTACTCATTTAACAATATTCAATCATTCCTTCAACTGCCATGCAAGCGTCCATGTGTCATGTCTAGTGTCAGTGTGGTATCATGAAGCCAGATACACATATGCTTTTAACTCTCATCTGATATAGAACATTTAGATGTGACTAAATGTTTAACAACCCTGAATAAAACAGGAAAAAAAATCTCAGATTTTTAAACAGTCACTTTGTTACCTCTGCTCTTTACACTCAAGTTTCCTTAGTATAAGTCATATCACACTTAGGTGACTAGGCTAGACTAGAAAATCAGGGATCATAAAACCTTCAGTCACAAATGTGAACTATTTGAAAAGCTCTGTCCATGAACTTTTGAAAGCCAAATTCAGCAAGATAATATTTTTTGTCTTTGTGTCTTTAGTTTTGACTAACATCTTACCTGTTTCCTTTACTCCATTCTACTGGAGGAGATAAGTATCTTGAGCAAAGAAGAAATGTGTAGGTCCGTATGCGACCTACACAGGCTTCTGTTCTTGGTTTTCCCATAACTATAAAGTTATAGGAGAATAAGAGGAGTCACTGACGCAGCCACTCATCCTATAACTACTCTAAAGTGATATTACAGTTCAGGAAAACAAAAACAAAAACAAAACAAAATAACAACAACAACAAAAAAAAACCTACCCAGAAAAACAAAACACCGACAACTAGAAAATGAGCTGAGCTAAGCTTTTCACTGCTTTCATTGTTTGATTGAATATTGGCAGCCACAGAAAGGCTTCAGATACTGCTGTGAGCATCCTAAGTGTTCTGCAGGATAAGGAATGATCTCCACTCCTCCTCATATTCATTCAATGATGTTCTTGAGATTTTATTTTCTTCCCCTTCTTCCATTTTCTTCCATTAAATGCACATAAAGAGGATTGCTTTTTTTTTTCCAACTAGGCCATCTTTCTTATGAATAAATGTCCTTGGCAAGCCTGAGCTGTGGCCACATGGTGGCCTTGCTACCGGGACCTAAAATAGCAAAGGCAAGGTGAAGCAGGGGGCAGGAAGCCGGAAGGAGAGCGAACATAGAACACCTGCCTTTCCAGATGGCTTCTTCTCACTTGGCTTTGACTTCCATTGACTTGGCTAGCCTGTGGGCTGGACCAGGCCAGGCCTTCTGTGCTGAGTGACTGTTCTTATAGTCAATTCTTTTTCATGCTGGTCACATTCTTTTCGTTTGTCACATTCTTTTCGTTTGCTACAGTAGCCAAGGGAAGAAGCAGTTTTGAAGTCAAGGGGTGAACTGGAGGTACAGCTCAGTTGGTAGAGTTCTTGCTTGACATGCATCATGTCTTGGGATTGCTCCCAGAACCTCATAAATGACATGGTGGAGCATGTACCTGGGAATTAGAAGTGGGAGAATCCAAAGTTCGATATCATCTTCAACTGCATAGTGAGATCAAGAGTCTGGCTTAGCCTGAGCTACATAAGAGGACATTTCAAACAAGCAAAGAAACAAAGTTAGGACACTTAAGTATTTTCTAGATAGATGTCAAATAAAATTTTGTTTCAGAGCCCAGACTTATTGGTTGGTGATATTTACTAAGCATTTACAAACTTCTAGTTACTGGTCCAAAATTTTTCATCTGGTAACTTATCTAGCCCTAAAACTCTAGGGTTTCATACGTAATAAAAATAATAATAATAAAAAAAAAACTCTAGGGTTTCTATCCAACACTATCTGTATCACTCATGGGCAAAGTGCTTATGGCTAGTAAACACTTTCAAACATAAAACAACATGAACTTCATCAGTTTTCTTCTTTTTCAAGAGAAGACTTGTGGGTCCGTGAGAAATCAGTATTCCTAATATCCTCTATAATTCAACCGAAGTCTCTCGAGAAGAGGAGTGGGGCTGTCAGGGCTGTCAGTCTCCCCTGCCTTGCCCCCTTGGATTTCCTAAGACTCAGAACCTTTCTCCCTTATCTTTCTCACAG
Seq C2 exon
CAAACCTTGAAGAAAAAATGGGTGGAGCTCAGGTCTCTGCACTTACAGGAACAGCGCCTGTTGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026832-Cytip:NM_139200:6
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.130
Domain overlap (PFAM):
C1:
PF0059519=PDZ=PD(4.6=16.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: