DreINT0005885 @ danRer10
Intron Retention
Gene
ENSDARG00000100818 | CCBL2 (2 of 5)
Description
cysteine conjugate-beta lyase 2 [Source:HGNC Symbol;Acc:HGNC:33238]
Coordinates
chr6:25127779-25128139:+
Coord C1 exon
chr6:25127779-25127965
Coord A exon
chr6:25127966-25128065
Coord C2 exon
chr6:25128066-25128139
Length
100 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
3' ss Seq
GTCTTGTCTATTGAATGTAGATC
3' ss Score
5.1
Exon sequences
Seq C1 exon
GAGGCTGTTGGCCGGGGTCTTCTTCGGGACTTTGAGCTGATGGGTCAGCCAGACTGCTACTTCTCCTCTCTGGCTTTAGAACTGGAGGGTAAAAGAAATCGCATGGCTGCCATATTGGCTCAGACCGGCATGACTCCAGTGGTTCCTGAAGGAGGATATTTCATTATGGCTGATGTCACAGCGCTCA
Seq A exon
GTAAGTGCCCTAAAGTGATGTTTGTTAAGGTAATTACATTTACTCAGGCACATTGAGATTCATCTGATTAGTGTTGTTCTGTCTTGTCTATTGAATGTAG
Seq C2 exon
ATCAGGATCTGACACATATGGGAGATGATGAACCATATGATTACAAGTTTGTCAAGTGGATGATAAAAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100818:ENSDART00000163440:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=FE(16.2=100)
A:
NA
C2:
PF0015516=Aminotran_1_2=FE(6.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGTCTTCTTCGGGACTTTG
R:
CTTCTCTTTTATCATCCACTTGACA
Band lengths:
248-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]