HsaINT0028661 @ hg19
Intron Retention
Gene
ENSG00000171097 | CCBL1
Description
cysteine conjugate-beta lyase, cytoplasmic [Source:HGNC Symbol;Acc:1564]
Coordinates
chr9:131597602-131597946:-
Coord C1 exon
chr9:131597760-131597946
Coord A exon
chr9:131597682-131597759
Coord C2 exon
chr9:131597602-131597681
Length
78 bp
Sequences
Splice sites
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
3' ss Seq
GTGTGGCCTCTGTCTCCCAGAGA
3' ss Score
8.07
Exon sequences
Seq C1 exon
GCTGCAGTAGCCGAGAGCTTTGAACGGGAGCAGCTGCTCTTCCGCCAACCCAGCAGCTACTTTGTGCAGTTCCCGCAGGCCATGCAGCGCTGCCGTGACCACATGATACGTAGCCTACAGTCAGTGGGCCTGAAGCCCATCATCCCTCAGGGCAGCTACTTCCTCATCACAGACATCTCAGACTTCA
Seq A exon
GTGAGTGAGACTTGCCGGTCTGGGCAGGGCGCAGGGGCTGGAGGCTGCAGGGGGCTCAGTGTGGCCTCTGTCTCCCAG
Seq C2 exon
AGAGGAAGATGCCTGACTTGCCTGGAGCTGTGGATGAGCCCTATGACAGACGCTTCGTCAAGTGGATGATCAAGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171097-CCBL1:NM_001122671:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=FE(16.0=100)
A:
NA
C2:
PF0015516=Aminotran_1_2=PD(7.2=92.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTACTTTGTGCAGTTCCCG
R:
TCATAGGGCTCATCCACAGCT
Band lengths:
179-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)