RnoINT0081176 @ rn6
Intron Retention
Gene
ENSRNOG00000016097 | Kyat1
Description
kynurenine aminotransferase 1 [Source:RGD Symbol;Acc:1306912]
Coordinates
chr3:8753337-8753689:-
Coord C1 exon
chr3:8753503-8753689
Coord A exon
chr3:8753417-8753502
Coord C2 exon
chr3:8753337-8753416
Length
86 bp
Sequences
Splice sites
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
3' ss Seq
AACCTCTTTTGTTGCCCCAGAGA
3' ss Score
6.93
Exon sequences
Seq C1 exon
GCTGCAGTAGCCCAGTGCTTTGAGCGGGAGCAGCAACACTTTGGACAACCCAGCAGCTACTTTTTGCAGCTGCCACAGGCCATGGAGCTGAACCGAGACCACATGATCCGTAGCCTGCAGTCAGTGGGCCTCAAGCTCTGGATCTCCCAGGGGAGCTACTTCCTCATTGCAGACATCTCAGACTTCA
Seq A exon
GTGAGTGGGCCTGCCCATGTCACTCAGGATTTGGGAAGGTACCAAAGTTGACCAGGACTCATCACAAACCTCTTTTGTTGCCCCAG
Seq C2 exon
AGAGCAAGATGCCTGACCTGCCCGGAGCTGAGGATGAGCCTTATGACAGACGCTTTGCCAAGTGGATGATCAAAAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016097:ENSRNOT00000021865:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.074
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=FE(16.0=100)
A:
NA
C2:
PF0015516=Aminotran_1_2=FE(6.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTGAACCGAGACCACATG
R:
ATCATCCACTTGGCAAAGCGT
Band lengths:
173-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]