MmuINT0029985 @ mm10
Intron Retention
Gene
ENSMUSG00000039648 | Kyat1
Description
kynurenine aminotransferase 1 [Source:MGI Symbol;Acc:MGI:1917516]
Coordinates
chr2:30186192-30186543:-
Coord C1 exon
chr2:30186357-30186543
Coord A exon
chr2:30186272-30186356
Coord C2 exon
chr2:30186192-30186271
Length
85 bp
Sequences
Splice sites
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
3' ss Seq
AACCTCTTTTGTTGCCCCAGAGA
3' ss Score
6.93
Exon sequences
Seq C1 exon
GCTGCAGTAGCCCAGTGCTTTGAGCGGGAGCAGCAACACTTTGGACAACCCAGCAGTTACTTTTTGCAGCTGCCACAGGCCATGGGCCTGAACCGAGACCACATGATCCAGAGCCTGCAGTCAGTGGGCCTCAAGCCCTTGATCCCCCAGGGCAGCTACTTCCTCATTGCAGACATCTCAGACTTCA
Seq A exon
GTGAGTGGGTCTGGCCATGTCACTCAGGGTTTGGGAAGGTACCAAAGTTGGTGAGGACTCAGCACAACCTCTTTTGTTGCCCCAG
Seq C2 exon
AGAGCAGCATGCCCGACCTGCCTGGTGCTATGGATGAGCCCTATGATACACGCTTTGCCAAGTGGATGATCAAAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039648:ENSMUST00000044038:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=FE(16.0=100)
A:
NA
C2:
PF0015516=Aminotran_1_2=FE(11.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGAACCGAGACCACATG
R:
ATCATCCACTTGGCAAAGCGT
Band lengths:
172-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types