HsaINT0028661 @ hg38
Intron Retention
Gene
ENSG00000171097 | KYAT1
Description
kynurenine aminotransferase 1 [Source:HGNC Symbol;Acc:HGNC:1564]
Coordinates
chr9:128835323-128835667:-
Coord C1 exon
chr9:128835481-128835667
Coord A exon
chr9:128835403-128835480
Coord C2 exon
chr9:128835323-128835402
Length
78 bp
Sequences
Splice sites
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
3' ss Seq
GTGTGGCCTCTGTCTCCCAGAGA
3' ss Score
8.07
Exon sequences
Seq C1 exon
GCTGCAGTAGCCGAGAGCTTTGAACGGGAGCAGCTGCTCTTCCGCCAACCCAGCAGCTACTTTGTGCAGTTCCCGCAGGCCATGCAGCGCTGCCGTGACCACATGATACGTAGCCTACAGTCAGTGGGCCTGAAGCCCATCATCCCTCAGGGCAGCTACTTCCTCATCACAGACATCTCAGACTTCA
Seq A exon
GTGAGTGAGACTTGCCGGTCTGGGCAGGGCGCAGGGGCTGGAGGCTGCAGGGGGCTCAGTGTGGCCTCTGTCTCCCAG
Seq C2 exon
AGAGGAAGATGCCTGACTTGCCTGGAGCTGTGGATGAGCCCTATGACAGACGCTTCGTCAAGTGGATGATCAAGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171097:ENST00000302586:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=FE(16.0=100)
A:
NA
C2:
PF0015516=Aminotran_1_2=PD(7.0=88.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTACTTTGTGCAGTTCCCG
R:
TCATAGGGCTCATCCACAGCT
Band lengths:
179-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development