DreINT0008420 @ danRer10
Intron Retention
Gene
ENSDARG00000021392 | CU459160.1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E7EYV5]
Coordinates
chr14:41139083-41139361:+
Coord C1 exon
chr14:41139083-41139226
Coord A exon
chr14:41139227-41139316
Coord C2 exon
chr14:41139317-41139361
Length
90 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
GGTTAATACTTGCATTTCAGAAT
3' ss Score
4.69
Exon sequences
Seq C1 exon
GTTTGGTGTGCAGAAGTGGAGGAGCGGTTGGTAAACTATTTACTCTCCCCTGACCGGTACAATAAGCTGATCCGGCCGGCGGTCAACAAGAGCCAGCAGGTCACCATTGCAATCCAAGTGTCCCTTGCTCAGCTTATCAGTGTG
Seq A exon
GTAAGTCATTTAGAAAAAAAAAATATATATATATATAAATGCCATACACAACTTTATGTATCACATAATAGGTTAATACTTGCATTTCAG
Seq C2 exon
AATGAGAGAGAGCAGATCATGACCACCAACTGTTGGCTTACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000021392:ENSDART00000039985:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PU(19.9=85.4)
A:
NA
C2:
PF0293118=Neur_chan_LBD=FE(14.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGGTGTGCAGAAGTGGAGG
R:
TGGTGGTCATGATCTGCTCTCT
Band lengths:
171-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]