RnoINT0036339 @ rn6
Intron Retention
Gene
ENSRNOG00000014427 | Chrnb4
Description
cholinergic receptor nicotinic beta 4 subunit [Source:RGD Symbol;Acc:2351]
Coordinates
chr8:59617151-59624338:-
Coord C1 exon
chr8:59624190-59624338
Coord A exon
chr8:59617196-59624189
Coord C2 exon
chr8:59617151-59617195
Length
6994 bp
Sequences
Splice sites
5' ss Seq
GTGGTAGGT
5' ss Score
7.23
3' ss Seq
ACCCCCATTTCCCTCCCCAGAAT
3' ss Score
10.04
Exon sequences
Seq C1 exon
GGGACTGCCGCCTGGCCAACGCAGAGGAGAAGCTGATGGATGACCTCCTGAACAAAACCCGGTACAACAACCTGATCCGCCCAGCCACCAGCTCCTCTCAGCTCATCTCCATCCGCCTGGAGCTATCACTGTCCCAGCTCATCAGTGTG
Seq A exon
GTAGGTGCCTGGGCAACTGTGGCCTGAGGCTTAGGAGAAGAGGCAGGGCTTTTTCTAGTTGCCTCTTAGGGCCTCCAGGAGAGAAGTGGATGGCTGTTCAGGGTGCAGGGCTGAGAGTTAAGTGACTGGCATGTTACTTCTGACCTTGCCGAATGGGTAACACTCCAGACTGCTAATCTTTTCTTCTACTATTTCTTAAAACTTATATTGATACATACATTTGATGGACACATAGTAATTTTCTCTTGTGGAATGCACTGTGACATTACACTCTACACTCGTGTGTAGAAATCATGTCAGGGTCAGTGGCATGCCCTGACGTCAGACATTTATTATCCTTTGTTTTAGGGCATTCAAAATTCTCTTTATTGCTATTTTGAAATAAGTTAATTATTATCAACCACTGGTGCCAGCTGCTATCCAGCTCCACCCTGTGCCCATCTTTCATTCCTCCTCCTGGCACAGCCTTTTGTAAACAAATGTTCTCCACTACTTTTCAGACAAGCAGGCCTTCCCACCATGTCTTAACAATTTATCTAAACTGTGAGGGTGCTGATCATGCTTCCAGGTTAGGATTCTTCAATCCAAAAGGAGTGTTAGCTGTGCCTATACACATGCTGTTCTCCCTGCGCCTCTGATTCATAGTTGGAACCATCTGAAAGCCCATGCTCTCATGGCATTTAGTAATGGAACATTGAACTGAGAGTGGCTACAACAAAAAGGGCCATCTATCATGTCATATGACCAGGAGCAGGTCAGTGCTTGCAGGGCTGCCTCACTCAATAATTCAATGGTGTCAGGACTCTAGGGCATGGCCAGAGATGCAAATGGCTATGGGAAATCTTTTGGATTCCTTGGATTCCTTTTGGAACAACAATGAAACTCTCTCAGAGTCCCGCCCTCTTGATAAACACTGCAGGCATCCTCTGGACCCCTTGTGGCCTCTTGCAGCTGGGTCTCCAACAGTCACAACTCCCAGCATGCTCAGGGACAGCCTCCATATCAGTTTGGTAGAGAAAACAGGAACCAGGCCAGGAGAAATGATGGGTACAGAGCCTCAGGCCTGTGCATGAAGGTGTGGGGAGGAGGGTCCCGACATTATGGTGTTCCAAACTGGATAGGAGGCAGTACAGAATTTCCTCCCTCATTCTCCACAGCTGTCTCAGCGTGGGGTTGCCTGAAGGAAATGCCATCCCTTTTAAACCTTCCCATGTCCCAACGAAATGGTTAGAACCCCTGCCCCTGGAAACCACTCAGAAGAAGCGATCACATGGGAGCTGTGTCCAGCCATCAGGTGCTAGCTGAGGGAGCTGGGCCTCCTCTGGACAGTGTCACCTTCTCTCCACAGCCCTGTGAGCCCTACAGGCTCAGCTCCTCCCATCTTTACTGCTCAAGAAGGGTTTGCCCAAATTGCAGCTGCCTCTGTCCCCTAGGAGGGAGTGAGCGTAGCTGGAGCCAGGAGAGGCATACAGCCTCTGCCCTTTCCCTGCCATGGAAAGCTGAAAGCAATGAGGACTTCTGACCAGGCCAAGCCAAGACTACTGTCTGAGCATCCCCGATCTGCAAAGGCCTTGTACTTAATCAGCAAGCCAGCTGCCTGCTCTGGCAGGGGTGGACAGGCAGGCAGCTCTGGCCACACACTGCCAGACACAGGCTGTCCCTGCCAGATCTGAGCTGTGGACCCTGTGGAGCAATAGAGGCTTCCAAAAAGAGGAGAGAACATAGCCTGCAGCTTTCCTTCTGCAAGTGCCCCTATGGGCTGTCATAGTCCCAAAGGCAAAACCGTTGACGTCTATGGAGAGGGTTCCTTTCTGGTTTGGGGAAAGATATTTGATTTTGAGGAGTGAGTGTTAGGGGCATAGCCAGTTTAAAGATGGGATGTCTAGGGAATAGACAGGGAGTTGGTGCTGGAGGAGAAAATCAGGCTTCCCCACTCTTCTCTTTGAGGAGTGACAGCCAAGGTCACTGTTCTGTGATAGCTAACATTCTGTCACACTCAGCTGCCATTAGTGGAGTGGAGAAAAGTAAGAGGTAGAAGACAGGCACAGGAGAAATTTCTGGAAGATAGAAAAGTCCCATATCTTTTTATTTATTCTTGTTTTTGTTGTAGAGGCAGGGTTTCTCTGTGTAGTTCTTGGCTGTCCTGGAACTCACTCTTGTAGACCATGCTGGGCTCAACTCTGAGGTCTGCCTGCTTCTGCCTCCTGAGTATTGGGATTGAAGATGGACAACACCACTGCCCAACTATAATCTCCCAGATCTTAAAATGAAGAGGCCAAGGAGACAGCTCAGTGGACAAAGCTCTTTTCCATATCCTATGAGGACCAGACGATGGGTCTCCAGAGCCCACTTAAAAATCTAGGCAGACATGGTATCCATCTGCAAGCCAAGGACTCAGGAAGCAGAGACGGGGTCCCCAGGGCAAGCTGGCTCTCTAGAGCAGCTGGCACCAGTGAGTTCCAGAAGTAGAGAACAACGGAAGACAACACTTGACTTCAGTTTTGAAGCCTTGCACACACAGCTGTGCATCTGTGCACCCACACACGTACACACAAAAACAGAGCAAACCTGCGTTTGTGAGAACTGGTCAGGCAGGACACCTGGCTCCAGGAACCGCGCACTGTGGAAACCAGGAGTCCACATAAAACAGTGTCTTGTTAGAGACAGGGTCTGGCTATGCAGTCCTACCTGTTCTTTAACTCAAGAGCCTCCTGCCTCAGCTCCACAGCCTCCTGCCTTGGCTCTGCAGATGCTGAGATTATAGAAATGTACTAGCATGTCTTGCTTAAAAACATGTTTAAAAGATAAGTTGAGGCTTTCAGCTTTCACTGATGGCAGAGGTGCTGGAAGATTAGCTTTTCTGAGGAACAATTAGAAGGGTGGACAAAATGCTGGAGGTCAGGGATTTTCAGCCAGGAAGCAACCAGCCAGGCTCCCGGAGGCGACCCTGATAGCCCGTGGTACTTTTTTTCTACACTTGATGGCTGGCCAACAGCATCTGCCCAAGAAGCTAAGACCTGGGACAGAGAGTGGCAGCTGCAGAGCCGGGAAGTTGGCTGGTGCCGGGGCCATTACAGGGCAGGGAGGATGCTCCACGAAACCTGGGTCTGACCAAGGACAGAAAACCCTGTGGGGCCCCTAGAAGGGTCACCCCAGTACTGAAAAATGAGTGACAACAGTACGTCAGTCCCCACAAAAGCCAGAGTGCTCTCTCCAAACCAGCTCAGCCCCAGACTGGATTAGATGATTCTCGGCAGTGCCCGCCATAGCGCCTGTGGAGGGCCGTGCAATCAGATGGAACTTAGCAGGCCTGGGGCAGGGAGATGGTCCAGTCAGTACAGTGACTGCCACGGGAGCATGAGGACCTCAGCTCAGACCCTCAGCACCCTGCAAGCAGTTGTGGGTATCATAGTTGGAGCCCAGTGGCCATCCTGAACCACGTAGATGAACCATCTAGTGTGGCAGCCAAGAGAGCTGGAGAGAAGCCAGATGGGCTTGTAGAGCGAACATCCGTGTACGCTCAAAATGTGACTCCTGTGTCACTCTTGTTCTACTGATATAAGTGCCTGGCTGAATTGCTCCAGGAGGTGACTACCAGGCTAGAATCAGAACACTGGGAATTCGTTAATGAAGAGGAAGCAGAGCACAAGATACGGTCAAAGAAATAAGGACGGCCGAGAGGGGTGGGGCTCAGGATAAAGGAGCCCAGGGCGGTGGGATGAGGCTGGGGAGTTACCAATCTAGCCCTGTAGAAGAAAGGCAGCCTGAGTAGAGATAGGACTAAAGAGAAATGGCAGGAACTGTAGAAGACTCAATCTTCCTGCAGAAGAAAATAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACAGAATAGATTTAGACCAATTAAATTGTGCAATGTCCATGTGTGGGTACTAGCCCAAGTTATGATAATAGGATTAATTTATTCATCCAAAAATATTCATCAGGTATCCAGCATATCCCTGTTGCTCTATTTTTTTTTTTCTCCTCGGGCTTCTTGGATCCTAGAGGGAGGTAGGGACAATATACAGAATTATAGTATGCAGGGGTAAAAGTGCTACAAAGACAGTCAGTATAGGGCGTGTATGGTGGTGAAGGGAGGCAGGGTGCCATTTACTGCAGGAAGGTTGGAGACTTCTCTGATAAGGTGACATTTCTGAGAGGTGAAAAACAGTTAAGTCAGAACCGCGTGAGTTTCCAGGGAAGGAGAGCATTAAAGGAAGCAAGCGTGACCACAGTGGGGTTTGCAAATGCAGCCTCGGGCATAGCTAAGGCCACAGGCCCTGAGGAGGGAGGGCTTTTGTTCTGAGCGAGGTTGGGAAATACTAGACGGTTTACACAGAACCATGGTCTAAGGACCTGAGATTCTAAAGACAACCAGAATGTCGGCTGTGAAGCTCCTGAGTTGTCCAAGGAACCGAAAGGAGTGGTGACAGAAATGGGGGGAAAGAGGTGATTCTGAGATGTAGGAAATGCATGTAAGAGTGCTTGATAGAGCAGGAAAGGGCATGTCAGACCCGCCAGGGTCAGCTGTCATCATCATTGTCATCATTGTCATCATGCTTGCTGAGTGTGGAATCATGAGCTTTGTCTCTGATGTGCTGGTGTGAAGTGATGTCTGAGTTACCTAATATGGTTTGCACGTCAGTGGCCTCCACAGACAGGCTCAGGTGTAAGCATACTTGGTCTCCAGCTGGAGACTCTTGGGAGAAATCATGGAATGTTTAAATAGTAAGGCCTGGCTGTCAGCAGTAGGTCACTGAGGGTGGGCTCAAGGCTATGGATTTTAGCCTGGCTTCAGTTGTAAGTGTTATCCATCTGCTGCCACGTGACTGGCCACAAGTTTCCACGCCAAAGCCAAAGCCCCAGCTACCCTGTATCCCTTGCCATGAGACTGTGACCCAGACCACTCCTTTCTCCCCCACTTAGTCACTTGTCAAGCATTTGGCTGCAGGGATGAACAAAATACTTAATATGGAAATTGAGAATGAGAAATGGGGCCATTGCTAAGGTAAACCTGTCCTGGATGTGCAAGGCCTTGGAACTGAGTCAAACAGGGAAATGGAGGTATATATAGCTAAAGAAATAGGAAAGTCCTAGCATGCTATAATCAGAGTTTAATGGGTCCTTTTGGTAAACTTTGTGAAAGACTAAGTTGGGGGTAGGGGGTGACAAGGGAGACAGGAAAAACCTAGGCTCATGAGATTTCAAGAAAGGTATAAAACAAATCTGGTTCTGTTCTATCTGTGCCCTACCAATCTGAATGTAGCTAAATTAAAAGGTAATGGACTAAGTTGCTTGGGGAGAGGAAATATTAAGGCAGTATAACTTTCATGTTTTGGCATGGTTATTACTTACTGCGTTTAGCAGACTTTATACTAGAAATTGAAGCCAGGAAGGTATAAAAAAAGCATACTTTGGAAAGGAATGTGAATGTGGCCAGAGTTGAGGATGGAGGGGGTCGCAGACAAACTGGCTATAGCTACTAAAAAAGGTTGGTGTGATTTAAGAGAAACCAGGCATTGTGCTCTAGGAAAAAAGGAGAGGTACCCTGAGAGGAACAAGACTCTCCCCACCCCCATTCCCTCCACCCCCAACCCCGATACTGAAGCCTCAGTGAGTGAGAGGGCCTGAGCTAAAAGAGTTGCTGCCAGGGTTTCCAACTCAAATCCACCACTGCTGGGAGTGTCTTCTCAGACTCAGCCATGAGGGTGTAGAGAGCAGCTGTGTTAGAAGGGGAGCTTCTCAAGCTGGCTCAGCTTGAGAATTTGGTGTTTTCCACTTGCTTCTGGTTTGTCAGATGTGGAAGATGCAGGAGGACCAGGGTTGTGGAACCTCTTTCAAGGGTTCAGAAGGCTGCTGCAGCAGACAGTGTATAGCATAACTGGATTCTCTGCAAGGAGTCCCTGAGAAGCCATTGCATGAAACTGGGAAGGCAGATGAAGCCGCCAAGGCTCCCACATGGACACAGAGTTACAACATTTGGGGTTTTCCCTGACAGGTTTCAGTCTTGCTCTGATCCAGTCTCTTAAGATTTATTTTTTATTTTGTGCATATGGGTATTTTGCCTTTTGGTTTATATGATCACGAAATGCCTGCAGCATACCTAGAGGCCAGAAGAGAGAGTGGAATCCTCTGGAACTGGAGTTACAGATAGGTTCCAGTCACCACGTAGGTGCTGGGAACCTCCTCAAGAGCAGCCACTGCTCTCAACCATTGAGCATCGCTCCAGGCTCTCTGGTCCCATGTGCCCCTGCTTTGTTCCCGAATGTCTCTCACAATGCAAATGTTTGTGACATTCTATATCAGAAGTAACTTCTCTTTTGACTTTACAGGGACTCACTGTTAAGAGAATGTCTGGAATCTTAGAAAAGACTTCAGACTTTTACAGTGTTGGAACCATAAGACTATGCAGCCTTTGGAAGTTGTATTAAATGTATCATTGCACTATAAGAGCCCCCAGGAGCTCATGGGGACCAGGGACAAAGTATTGTAGTGTAAATATGGAATGTCCTCCACTGGTTCGTTCCTTTAAACACGTGTTCCGCAGTAGGCTGCACTGAGAAACAGTGAAACCTTTCGGAGATGAGGAAACGCCGTTGTGAGCAGGCTTGTGGGTCGTAGCCTGGTCCCAGTTCCAGCTCAAGTCTGTCCCTGCTTCCCACAGTCCCCTACAGTATGACCAGGTATAAGCTCCACATGGAGGCTGGAGCTCTAACTGCCATGCCACCCTCATCGTGAAACTGGGAGCTAAAACCAATCCCTCGTACCCTGAGCGGCTTCTTGTCGTATGCGGTCACAGCATTACAAGAAGTAACTAATAGACCACCAAAGAGATATTTAGGTGACAACTGGGTCATACAGCCCTGGGGCTCTGAGCTTTTCTGTGATAAAGGATAGCCCATTGGTGAGGTCCCTCCTTCCAAAAGAACTGACACCCCCATTTCCCTCCCCAG
Seq C2 exon
AATGAGCGAGAACAGATCATGACCACCAGCATCTGGCTGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014427:ENSRNOT00000019458:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PU(19.9=82.0)
A:
NA
C2:
PF0293118=Neur_chan_LBD=FE(6.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]