GgaINT1009470 @ galGal4
Intron Retention
Gene
ENSGALG00000003005 | CHRNB4
Description
neuronal acetylcholine receptor subunit beta-4 precursor [Source:RefSeq peptide;Acc:NP_990150]
Coordinates
chr10:3108967-3110402:+
Coord C1 exon
chr10:3108967-3109112
Coord A exon
chr10:3109113-3110357
Coord C2 exon
chr10:3110358-3110402
Length
1245 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGC
5' ss Score
8.15
3' ss Seq
CTCTATGTCTTCTCCTGCAGAAC
3' ss Score
11.62
Exon sequences
Seq C1 exon
GAAGCACTGCAGCAGATGCTGAGGAAAAGCTAATGAACCACCTACTGAGTCCTGACAGGTACAACAAGTTAATTCGCCCAGCTGTCAACTCATCCCAGTTGGTATCTATAGAACTGCAGGTTTCCCTGGCACAGCTCATCAGTGTG
Seq A exon
GTAAGCTCAAATTCAGCTGTTCCTTTTTAATTCATTACTATCTACACAGCATACTAAGTAAAAGTCATACTGCTGTTACCTGTCCCTATTATTTTATAATTTACATAATATTTAGTAGGTGGGGCCCATACTGGTTTTACTTCGGAATGCATCTACAACAGGAAGGTCAGTCTATGCCTAAGCAATAAGGACAGCAGCCAGATCTTCCTCCTATAAAATCCCACTGATCAAAAATCAAAATCATTCTATTGATTTCAGTGCAGCTGACATAAGTTACTCTAGGTCAGGATCTATTCTGTACCGTGTATGTAATACTAAGCCATCTTTTGCATTGTGAAATGCAAAACGTGGTTTACTGGTATGAAAACAAGCCAGGAAGACAGCTCAAGATCCCACAGTATATCAGCAAAGCACAGTGAAATGTTACCAAGAGAAAGACATGCTAGTTCTGTCTGGAATAGCTTAACGTCATTAAATCAATCCTCATGTAAGCAACTCCCCATCTTCAATAACATTGAATTCTAAGGGTCTGAAAGACATTTTTACTCCAAGTTAACGTGTGTTTAACAGTCCTTCCAAGCCACAAATATACCTTGATGCCAAGACAGGTTTAGCATTAACAACAGTGTGAATGAAATCTAGCACATAAGTGGGAATGATTTCATGAAGTGGGGCTTTCAGCTCTGCTGCTCTTTCCCTGGGTGAAAAAGGATACAGACAGTTGGTTCTCTGTATGGGCAGGGATCAAGAATGATGCAGTTCAGTCCCTGTCTCTCTGTTCCTTCCCTCTTCAGGCAGAAGGCAAAATAAATGATCTTATGGGCTCTAAGAATATCAAGCACCTTCAGCAGCAAGGAAGTACTTTTCTTTTATCCCAATTCTTTTACCTCCTATCTTGCTCCTTCAGCAGAACCCCAAGTACACAGATCTGCTGCAGAGAAACTCCTACCAGTTCCATGAAGCAGAGACTGCCAGCCAAGATCTTTCATGACAAACCTTACATAAACTTTACACAAATTACTGGGCTTCTGAGTGGCCAAAATATGCCTTCTGTTTCAAATCAAATGCCCAAGAAAAAAAAAAATCAGCTTGTAGGGAGAAATTGTTCCCAAGTAGCAACATTCACACCAGCCACAATTGCTCGTTAAATGCCATGTGGAGCTATACACATGGAGAGTTACTATATATTAACAGTATATTGCTGCAATAACACTGAAGAACTTTTCTCTATGTCTTCTCCTGCAG
Seq C2 exon
AACGAACGAGAGCAGATCATGACTACAAATGTCTGGCTAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003005:ENSGALT00000039804:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PU(19.9=83.7)
A:
NA
C2:
PF0293118=Neur_chan_LBD=FE(6.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]