MmuINT0036276 @ mm9
Intron Retention
Gene
ENSMUSG00000035200 | Chrnb4
Description
cholinergic receptor, nicotinic, beta polypeptide 4 [Source:MGI Symbol;Acc:MGI:87892]
Coordinates
chr9:54884394-54891732:-
Coord C1 exon
chr9:54891584-54891732
Coord A exon
chr9:54884439-54891583
Coord C2 exon
chr9:54884394-54884438
Length
7145 bp
Sequences
Splice sites
5' ss Seq
GTGGTAGGT
5' ss Score
7.23
3' ss Seq
ACCCCCCCTTCCCTCCCCAGAAT
3' ss Score
12.26
Exon sequences
Seq C1 exon
GGGACTGCCGCCTGGCCAACGCAGAGGAGAAGCTGATGGATGATCTCCTGAACAAAACCCGCTACAACAACCTGATCCGCCCAGCCACCAGCTCCTCCCAGCTCATCTCCATCCGCCTGGAGCTATCACTGTCCCAGCTCATCAGTGTG
Seq A exon
GTAGGTGCCTGGGCAAATGTGGCCTGGGGCTTAGGAGAAGAGGCAGGACTCTTTGGGGAGAGAAGTGGATGACTGTTCAGGGTGCAGGGCTAGGAGTTAAGTGACAGGCATGTTACTTCTGACCTTGACAGATGGGTAACACTCCAGACTGCTAAACTTTTCTTCTACTATTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTCCTTCCTTCCTTCCTTCCTTCCTTCTTTCTTTCCTTTCCCTTTCCCTTTCCCTTTCCCTTTCCCTTTTTCCCTTTTTCCCTTTTTCCCTTTTTCCCTTTTTTTCCCTTTTTCCCTTTTTCCCTTTTTCCCTTTTTCCCTTTTTCCCTTTTTCCCTTTTTCCCTTTTTCCCTTTTTCCCTTTTTCCCTTTTTCCCTTTTTCCCTTTTTCCCTTTTTCCCTTTTTCCCTTTTTCCCTTTCCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTGTTTTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTATCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCTTCTGCCTCCCGAGTGCGCCACCATGTCCGGCTTCTTCTACTATTTCTTAAAACGTATATTAATACATATGTTTGATGGACACATATTAATTTTCTTTTGTGGAATGTAGTGTGACATTGCACGTGTGTGTAGAAATATCCAGTCAATTATTATCAACCACGGGTACCAACTGCTACCCAGCTCCACCCTGCGCCCATCTCTCATTCCTCCTCCTGGCACAGCCTTTTGTAAACAAATATTCTCTACTACTTTTTGGACAGTCAGGCCTTTCCCCCATATCTAAACAATTTACCTAAACTGTGAGGATCATGCTTCCAGGTTAGGATTCTTTCATCCAAAAAAAGTACCACCTGTGCCTATACACACGCTGTTCTCTCTGCTCGGGATATTCTACCCCCTCTGTGCACCTCTGATTCGTAGTTGGAGCCATCTGAAAACCCATGCTCTCATGGCATTTAGTAATGGAACATCAAACAGAGAGTGGCTACAACAAAAAGGGCCATTCATCAGACCAATGACCAGGAGCAGGTCAGTGCTTACAGGGTTGCCTAGCCCCATAATTCAATGGTGTCAGGACTCTAGGGCATGGCCAAAGATGCAAATGGTTGTGAGAAATCATTTGGATTTCTTTTGGAACAACAACAACAAAACTCTCTCAGAGTCCTGCCCTCTTGATAAATACTTACATCTCACTGGCCAGGGCTAGCAACTTACATCTAAGCCTAACCAATCATTGGCCAGATAATTACTTTGGCTGGTTTAGATCTGTCAGGGTGTGGCAAGGAGACCATGAGGTTTAGTTGTGAAAGAGGAAAGATAGAGCAGGACCATTAGGCAGGCATCCTATGGACCCCTTGTGGCTCCCTTTAGCTGGGTCTCCAACAGTCACAGCTCCCAGCTTGCTCAGAGACATCCTCCATGTTGTTAATTTGGTGGGGGAAATAGGAACCAGGCCAGGAGAATGATGGGTACAGAGGCTCAGGCCTGTGGATGAAGGTCTGGACGGGCACAGAAGGTTCAACAGGTGTGGGAAGGAGGGTGCCAACATTCCAGGTGTTCCAAGCTGGATTTGAGGCAACAGGGGCACCGAGGAAGGCGAATGTGAATGTGATCGTAATTTCCTTCCTTGTTCCCCACAGCTATCTCAGCATGGGGTTGTCTGAAGGAACCGAGGTCCCTTGTAAACCTTCCCATGTCCCCACCAAAGGGTTAGAACCTTTGCCCCTGGAAACCACTCAGAAGAAGTGATCACATGGGTGATGTGTCTAGCCATCAGGTGCTAGCTGAGGGAGGCAGGCATCCTCTGCACAGTGTCACCTTCTCTCGCCAGCCCAGTGAGCCCGACAGGCTCCGCTTCTCCCATCTGTACTGCTCAAGAAAGGTTTGCCCAAATTGGCAGTTGCCTCTATCCCCTAGGAGGGAGCCTAGCCCCAGAGTGGGAAGAGGCACACAGCCTGCCTCTGCTCTTTCCCTGTCATGGAAAGCTGAAAGCAATGAAGGCTTCTGACCAAGCCACACCAAGACTACTGTCTGAGCATCCCCGACCGGCAAAGGCCTTGTACTTAATTAGCAAGCCAGCTGCCTGCTCTGGCAAGGGTAGACAGGCAGGCAGCTCTGGCCACACTGCCAGACTCAGACTGTTCCTGCCAGATCTGAGCTGTGGACCCTATGGAGTAATAGAGGCTTCCAGAAGCAGGAGAGACACAGCCTGCAGCTTCACTTCTGCAAGTGCCCCTATGGGCTGTCATAGCCCCAAAGGCAACCCCTAGGCTTTCTATGGGGAGAGTTCCCTTCTGGTTTGGGGAAATGTATTTGGTTCTGAGGAGTGAGTGTTAGAGGCCTAGCCAGTTTAAAGATAGAATGTCTAGGGAATAAACTAGGAGTTTGTGCTGGGGGGCAAGCAATCTTTCCCACTCTTCTCTTTGAGGACTGACAGCCAAGGTCTTATACCACTGTTCTGTCACATTCAGCAGCCACTAGTGGAGTAGAGAAAAGTAAGAGGCAGAAGAAATGCACAGGAGAAATTTCTGGAAGATAGAAAAGACCCATATCTTTTTGTTTGTTTTTGTTTTAGAGGCAGGGTTTCTTTGCAAGGTCATTCCTGTCCTTGAACCCACTCTGTAAACCAGGCTGGCTTCGAACTCTGAGGTCTGCCTGCTTCTGCTTCCTGAGTGTTGGGATTAAAGGTGGCCAACACCACTGCCCAACTAAAGCCTCCCATGTCTTAAAATGAAGAGGCCAAGGAGACAGCTCAGTGGACAAAGCTCTTTCCCGTATCATACGAGGACCAGACTATGGATCTCTAGAACCCACCTAAAATCTAGGCAGACCCGGTGTCCACTTGCAAATCAGGGACTCAGGAGGCAGAGACAGAGGGTCCTGGGGCAAGCTGGCTCTGTAGAAGAGCAGGAATCAGCGAGTTCCAGTTTCAGCAAGAGACCCTGCCTCAATAAGCAGAGCAATTGAAGATGACCCTTGCCTGCGGTTTTGAAGCCTGCATACACACCTGTACATCTGTGCACCCACACATGTATGTACACACACATACACACACACACACACACACACAAAACAGAGCAAAAACTGCATTTGTGAAAACTGGTCAGGCAGGACACCAGACACTAGTACCACCCACTGTGGAAACCATGAGTCCACATAAGACAGTGTCTTGTTAGAGACAGGGTCTAGCTATGTAGTCCTACTTGTCCTTTACCTCAAGAACCTCCTGCCTCAGCTCCATAGCTCTGCAGATGCTGGAATTATAGAGATGCACTATCATGTCTTGCTTTAAAACATTTTAAAAAGATAAATGGAGGTTTTGAGCTTTCATTGATGGCAGGGATGCTGGAGCTTTTCTGAGGAACAATTAGAAAGGCTGAACAAAATGCTGGCGCCTCAGCCAGGGCTTGAATGGCCAGCTTCCAGGAGGCGACCCTGACAGCCTGTGGTGCCTTTTCCCACACTTGATGGCTGGCCAACAGTATCTGCCTAAGAAGCTAAGGCCTGGAACAGAGCAGCAGCTGCGGAGCTGGGAAGCTGGCTGGTGCTGGGGGCCATCCCAGGGCTGAGAGGATGCTCAAAGGCAACTTGGATCTGACCAAGGACATAGAAACCTGGTGGGGCTCCTGGAAGGGTCACCCAGTACTGGAAATGAGCAACAACAGTAAATCAGCACGCACACGCACATGCACATGCACACACACACACACACGCACACACATACACACACACATGCACACACACACACATGCACATACACATGCACACACACACATACGCACACACATGCACACACACACATACACACACACATGCACACACACACATACACACACACACATACACACACACACACACACACACACACACACACACACACACACACACAAAACAACAACGGTGTTCTCTCCAAACCAGCTCAGCACCAAACTTGATTAAGATGATCTTTGTACTGTCTGCCATAGCGCCTGTGGAGGGAGGTGCAGTCAGATGGAACTTAGGTGTGGGGGCGGGAAGACAGTCCAGTCAGTACGATGATTGCCACAGGAGCATAAGGACCTCAGCACCCTGCAAACAGTCCTCTGACCTCTGACCTCAGAGCATAGCAGGTGCATGTATGAGCATCCACACAAATAAATGAATGCAGTAAAAAAAACTTTTTAAACATTTAAGTTTTATGCTGAGTGTATTTTATTTATGCTGCACAATTCAAAATTTAAAAAATCTTTTCTTAAAATGAAAATAGCTATCATTATATATTCAAGGAAAATGATAATGGAAATTTTCTTCAGAGAGCTAAGAACTTTTAAAAAGAACCAATGGTCTGATTTCTAGAACTCAAGCATATCAGAACCTTAAAACTCACTGGAAAAAAAAACTTATCAGAACAAGACAGCCAACATTCATCTTTCTTCCTGCTCTTCTCCTCACAACAGCCTGGGTTGTGGGTGTTACGGTTGGAGCCCAGGGACCATCGTGAACCATGTCCATGAACCATCCAGTGTGGCAGCAGAGAGCTGGAGAGGAGCCAGATGGGCTTGTAGAGCGAGCATCCGAACATCCGTATATGAGCAAAGTGTCACACGGGGGTCGATTTTGTTCTTCTGATGTAATTACCTGGTTGAATTGCTCGAGGAAGTAAGAACACTGGGAATTAGTTAATGAAGAGGAAGCAGAGAGCACAGGATACATTCAAAGATGTAAGGTAGGCCAAGAGGGCTGGGCCACAGAATAAAGGAGCCCAGGACAGTAAAATAAGGCTGGGGGAGTTACCAATCTAACCCTGTAGAAGACAGGCAGCCTAAGTAGAGATAAGACTGAAGAGAAATGGCAAGAACTTTAGAAAACTCATTCTTCCTGCAGAAAAAAATAGGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGACAGAGACAGAGAGAAAGTTGTCCAAGGACAGAGAGGGGTGGTAACAGAAATGGAGAGAAACAGGTGATTCTGAGATGTAGGGTGCTTGATAGATCAGGTTGGTATGTCAGAACTTCCAGGGTTAGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTAGTGGGGAATCACGAGCTTTGTCTCTGATGTGCTGGTGTGAAGTGTGTTTGAGTTACCTAATATGGTTTGAATGTCAATGGCCTCCACAGTCGGGCTCATGTGTAAGAATCCTTGGTCTCCAGCTGGCAAGACTCTTGTGAGAAGTTGTGGAATGTTTAAATAGTAAGGCCTGGCTGTCAGAAGTAGATCACTGAGGGTGGGCTCATGGCTTAGGACATTTTAGCCTGGCTTCAGTGGTAGGCATGAATACCTGTTATCCATCTGCCACCACAACGTGACCAGCCACAAGTTCCCACACGAAAGCCAAAGCCCCAGCTACCCTGTATCCCTTGCCATGAAACTGTGAGCCAGGTCACTCCTTTCTTCCCCCTTAGTCACTTGTCAAGCATTTGGTTGCAGAGATGAACAAAATACTTCTTATGGACATTGACAATGAGAAGCAGGACCAATGCCGAGGTAAACCTTTCCAGGATGTGCATAAAGCTTTGGAACTGAATCACACAGGGAACTGGGGGCATATGTAGCTAAAGAATTGGGGAAGTCTTAGTATGCTATAACCAGAGTTTAATTGGGTCAATTTGGTAAGCTTTGTGAAAGACCAAGATGCAGGGTGAGGGTGGCAGGGGGGAATGGAACAGGAAAGACTAGGCTCATGAGATTTAAGAAGATATGTCCTGGAAAAAAAAAACAAATCTGGTTCTGTAATACCCATGCCCTAACAATTTGAATGTAGCTAAATTAAAAGGTAATGGACTAAATTGCTTGAGGAGAATAAATATTAAAACAGTATAACGTTCATGTTTTGGCATGGTTAATTGCTTACTGCATTTAGTGGGCTTTATATGCCAGGAAGGTATAAAAAAAAACAAAACAAAACAAAACATACTTTGGAAAGGACGTGGATGTGGCTAAAGCTGAGGATGGATGGGGTTGCAGACAAAATGGCTGTGGCTGCTAAACATGGTTGGTGTGATCTAAGAGAAACCAGGCATTGCGCCCTGAGAGGAACAAGACTCCAGCATGGTACTGAAGCCTCAGTGGGTAAGAGGGCCTGAACTGGAAGTGCTGCTGACAGGCTTTCCTCAAACCCACCACCAAGAGCAGGGGAGTGTCTTCTCAGGCTCAGCCACAGGGTGCAGAGAGGCAGGAGTGGCTGTGCTCCTCTGGAGCTAGAGTTACAGATGGTTTCCAGTCACCACAAGAGCAGCCACTGCTCTTAACCATTGGGCCATCTCTCCAGCCCCTCTCATCTCATCTGTCCTTGCTATGTTCCTCTTGCTATGTCTCTCGCTTTTGGAATGCAAATGCTTATGATATTCTACATCAGAAGTTACTTACCTTTTGACTTTACAGGACTCACTGTTAAGAGTGTCTAGAATCTTAGAAAAGACTCCAGACTTTTACAGTGTTGGAACTGTAAGACTATGCAGCCTTTGGAAGTTGGATTAAATGTATCATTACATTTATAAGATGGCCAGGAGCCTGTGGGGACCAGCGACAAAGTGTGGCAGTATAAATATGGACTGTCCTCTGTGCGTTCATTCCTTTAAACACTTGTTCCCCAGGAGGCTGCACTGAAAATGCTAAAACCTTTCAGAGATGAGGAAACGGGCCATTGCGAGCAGGCTTGCTTCATCCCAGTTCCAGCTCCAGCCTGTCCCTGCTTCCCACTGGTCGCCACAGTATGACCAGGTGTGAGTTTCACTCAGAGACTGGAGCTCTAGCTGCCATGCCTCCCTCACCATGAAACTATAAGCTAAAACCAATCCCTTTATCCTGAGCTGCTTCTTGTCATATGTGGTCGCAGCACTGCAAGAAGTAAAAAATACACCGCCCAAGAGAGATTTAGGTGACAGCTGGTCACCCAGCCCTCGGGTTCTGAGGCTTTTTGCAATAAAGTATATTTCATTTGTGGGGGGGTCCTCCTTCCAAATGAACTGATACCCCCCCTTCCCTCCCCAG
Seq C2 exon
AATGAGCGAGAACAGATCATGACCACCAGCATCTGGCTGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035200-Chrnb4:NM_148944:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PU(19.9=82.0)
A:
NA
C2:
PF0293118=Neur_chan_LBD=FE(6.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: