DreINT0008833 @ danRer10
Intron Retention
Gene
ENSDARG00000014592 | DENND1A
Description
DENN/MADD domain containing 1A [Source:HGNC Symbol;Acc:HGNC:29324]
Coordinates
chr21:8355097-8355453:+
Coord C1 exon
chr21:8355097-8355177
Coord A exon
chr21:8355178-8355399
Coord C2 exon
chr21:8355400-8355453
Length
222 bp
Sequences
Splice sites
5' ss Seq
GTGGTAATA
5' ss Score
3.78
3' ss Seq
CTCTGTCTCTCTCTCTCTAGCAT
3' ss Score
11.81
Exon sequences
Seq C1 exon
GACATTCAGTGGAGGGAGTTGTTAGAGTCTCTACATGTGTTAAACATCCCTGATCCTGGAGTGCCTGTGCATTTGAGTGTG
Seq A exon
GTAATATACAGGAAAACACACACCTATATCAATGTATATTTTTATAAACAATATGATATGAGACTATACCATTTATATCTATGTTCTATAGTCTGATACAAGATATATACCATATGTCACAATATTTGATATTTGGGGGATCAGACAAGATGTTGGATATTGTAAGATATTATCTTTGTCTTGTATTAAGCTTATTACATTTCTCTGTCTCTCTCTCTCTAG
Seq C2 exon
CATTTGTTTTTCACAGTGCCTGATCCAAGAGAATTACCCAGTATACCTGAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014592:ENSDART00000143151:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(14.4=100)
A:
NA
C2:
PF0214116=DENN=FE(9.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]