HsaINT0046713 @ hg38
Intron Retention
Gene
ENSG00000213047 | DENND1B
Description
DENN domain containing 1B [Source:HGNC Symbol;Acc:HGNC:28404]
Coordinates
chr1:197645690-197647114:-
Coord C1 exon
chr1:197647055-197647114
Coord A exon
chr1:197645744-197647054
Coord C2 exon
chr1:197645690-197645743
Length
1311 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
GATTTATTTGTATTGATTAGCAT
3' ss Score
3.31
Exon sequences
Seq C1 exon
AACCAAGAGATATTTATTGCCTGTGAGCAAGTTCTGAAAGATCAGCCTGCTCTAGTACCG
Seq A exon
GTGAGTTAAAAGGACATTGGCTTCTAAAAATCACTATTAAATAGGAAAAATAATCACTTATTTCACTATGCCTTTAAGCTTCACTCCAGCCCTTTGGGAAATGGTGAATTTGACTCTTAAGAAAATTAATCATTTGGAATATATAATATTTTCTGTTTATACTATCTTTTAAAGCATAGTTTTATGAAATATAGTACTATTAAAAACTATTCCAAATAAAAGTAGGTTATAGAGACCGAAATCTTTGCATATTCTCCATTTTCAGTAGTAGTAATTTTAAAGTATATTCACAGCACAAGATTTGTCACATTTTTTGGTCCCAAGATCACAAAAGATCTTGTGATTTATCTCCTATTGTTCTTCTACCCTGGAAAATTATAGATTATGACTGTGTTAACTATCCTTGTTCTGACTAGTTCAACTGTGCTCAAATATTGGCTAAAATGTTTCTTTTCTAATCATTAATAATAAGATATTATTAAATATGTCCTTATGTGATTCAGATATTAAATAATTTTGGAGATTAATATGAACAGAAAATAAAACTTTTGATGATTAAATTGCACTTTGATTCTGGGTGGTAAAATTTGGGAACATTGTGGGAAACATGAAGGCATATATACACAATGTATTCTTTATGTAAGTATTCTGATGAACTGTTTTACTTCTTTGAACATTATAGAAGCTAATTAATATTTGGCAGATGTGTAACAATCATATTTTGGGATTACTACGTGTTTAAGAAATTTTAAACATTGAAAAATTATGCTTTATTGCTATTTGCTAAATAATAGGGTGGTTGATGTTTACAAAAGAGATTTCTTGTGACTTACCATAGAAACCCAGCCCAGGAATCTTAGTAGATTTTGATATATTTGGTTAGCAAGCTTTAATTTTTCCAGTCCACCTCAACTAAATGTGTTTTAATAATATATATGTTTATATGTATGTATAGGTGTGTATGTCTCTATATACTGTATATATACACATACGTGTATATGTATATATGTACAAAATAAACCTTTCAGCAATATACTCTTTTTTTGCCTTAACATTTTTTCCCTATTTTAATTTTAATTTTAGGGTCAAATATTTTTAACCAAGTCTTAACTTTTTGTATGGCAATGTAATTGTTAAATCTCATATAAACCCGCTAACTCATTTAAGAATCTCTCAAATTCAACAAATCCTGAATGTCAGTCCATGGCATTTTTTAATTTACTCAATATATTTTTTTCTGATTTTCATTACAAATTATATGTTACCAGTTTTAATTATCTTTTTCATATGTGATTTATTTGTATTGATTAG
Seq C2 exon
CATTCCTACTTCATTGCCCCTGATGTAACTGGACTCCCAACAATACCCGAGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213047:ENST00000620048:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(9.5=100)
A:
NA
C2:
PF0214116=DENN=FE(18.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development