MmuINT0048233 @ mm9
Intron Retention
Gene
ENSMUSG00000056268 | Dennd1b
Description
DENN/MADD domain containing 1B [Source:MGI Symbol;Acc:MGI:2447812]
Coordinates
chr1:140951118-140956905:+
Coord C1 exon
chr1:140951118-140951198
Coord A exon
chr1:140951199-140956851
Coord C2 exon
chr1:140956852-140956905
Length
5653 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
GCTTCATTTCTGCTAACTAGCAC
3' ss Score
3.74
Exon sequences
Seq C1 exon
GAAGAGGATTTGAATGAAACTCTTAAATCACTCTATAACCACCCAGTACCAAAGGCAAACACTCCTGTCAACTTGAGTGTG
Seq A exon
GTAAGTACTTCATAAGTTGTTTTCAGACACAGTTCATTCTCACTGAAGAATGCACATCTGCTCCAGGAGTCATTTGCCAAAATCACCCTGTTTCCATGAAAATGTCAAAGATGGTGTTAACCTTGCTTGGTGCTAATAACTGAAATCCATAAATAATAAATATATAAATGTACACACATACATGTATGCACACATGCCCACATAGACACACACACGCATATCTACAATAAGGTGGGCATCACAAAAGAAACTTGTCTAGTAATGTGCAGAATTCCGACTAAAATGCCCTTGTCTTTCCTTCCATGCAAATGTACCTTCCAGGGTAGTTATGATCCCTAGAGCTGTGGTCAGCATTTGTGTGAACAACAAGCCTCTGTGCCGGCTTGCTGAAGCCTCTTAGTGAACTTTCCCTGTCACATCTGCTTAGGTTGATGCTCAGGATCTCTGGGGGCTGGTTGACATCAAAAGTTGTTGATAACAGAGTATGGAGGTTTCATTCATATCTTTTGTTAATTTTTCAAATAAAATAGGCTAACATTTATTGTTATTGTCATTATTTCTTGTTAATATGTTTGGTGTTTTTCTCTCCAAGATCAAGGAAAAACATTAATAGGCCAAGCAAATTATTTTAGGCAATTCAGCTTGAAATGTTTATTTGTGTAAGACATTTTGCAGTTTTGAGTGATAATGAAATTGTTTTGCTCATAAAATAACAGTCTTCATGCCTGTATTGCTTCTACCATCTGCAAATAGCAGTACTGTCGTAATCTATTCCTGAAGCCCCCACACGCAGCAGTTTGATTCAGATTCTACACAGTTCCCCTTAAGTGATTCTTCTAGTTCATTCTCATAAAGAGTGTCAGAGTAAACTTTCTTAAACTATAAAGTTCTTTGTTAAAAAATTGTAATTCCTCAGTTTGTTTGTTAAACAAAGTTAAACATTTTTAATGAACCTGTATACGTTTGGTATTCTAGGCAACCACTCTCCCTCAGAGACACATGTTAAATTAAAAGAAAATTATTTGACATTGTTTTCATAAAGTATATTTTGATCATGTTTTTCCTTCTTCAAACTCTTATATCATCCCTGACCTTCCTAGGTACCCCATTTCATTCTTTCTCTCTTTCTTTCTCTCGTTCTCTCCCCTTTATCCCTCTCCCTCTCAGAAACAATAACAATAGAAATGGAACCAAAAAGAAAACAACCAACAAAACTCCACAAGTGTAACAAAAATACTTTAAGAAACCAAAACACACACAACAAGAAACCATGAAGTCTTTTTTATCTTGGTTAGCTACACATGGGTATGGGGACTGCTCCAAAGTGTGGTTGGTACCCAGTGACACTCCAGTGGAGAAAACTGATTTTCCTTTTCCTAGTAGGTATCTATTACAAGTAGACTCTTAGTTAGGTGTCTCGGGACCTTGTGTCCATTCCCTCCTCTCAGTACTTGGTCTCCTCAGGCTCAGTGCAGGCTGTGTGCACGCTGACACAGTCTCTGGTTTCTGTGTGCTGCAGTCATTTTGGGTCTGGCAGACGTGGTGTATGTACTTGGAGACATCATCACCTCTTGCTGCTCAACTCCTTCTGCTCCTCTTTTGCAGAGATCTCTGAGTCTTGAAGGGAGCACTTTGATAAATACATCCCATTTAGGACTGAGCACTCAGGAGTCTCATTCTCTGCACCGTGTCCAGCTTTGGGTCACTGTGTTAGTTCCCATCTATTTTAAGAAGAATCTTACCTGATGAAGGCTGAGTGAGGCACTGATGGATGGGTATAGCGATAGCTCATTAGCAGTCATTTTATTGCTAAGTTCCTTCAACAGAATAGTAGTATTCAGTTTTTCATAAGGAAAACCTCTCCATGAGATGGACCCCTTTTTGACACTACTAAAATGACTCAGAATCTTAAATTTCTTTATATATAATTTTGAGACAGAGTAATGAGTGTATGGTGGCTCTGTGCTTCTGGTCTTGCTGGCATCCAGTTTCTAGTCCTTCTGTCGTAGCCCCCCAAATACCAGCATACCAGTCTGTAACTTCCTGTTTCATATAGAAAATTTCTAAACTTTTGGCTTCCACTTTCAGGTTCACCTACTTAGCACTTAGTTTTACTCCAAGCTTTTTTTTTTTTTTTTCCTGTCTCACTATTTTATCTCATTCTTGTCTTATCATTCTAGTCAGCATCTTAAGTGAACACTATCCTTTCCATTCACTGCAAAGCCCTTTGTCGGCTGACTGGCTCTAGAACCTGCCCTGTTCCTGCTCTTATGAAGTCCTCTCCACACACTTGACCATGTTTGTTCTCTCCTTTGCTGACTTTGCTCCGTGTGTTTTCACTTGCTGCAAACTGCCCAAGTGGATAGAATTGATTTCCACTGGAGAAGATGGAATGGAAAGCCAGGAGATGGGATCTTTTTTTTGGGGGGGGGGCTGTTTTTTCTTTTCTTTTTTATTTTTTATATTTTCTTTATTTACATTTCAAATGCTATCCCAAAAGTTCCCTATACCCCCACCCTGCTCCCCTACCCACCCACTCCCACTTCTTGGCCCTGGTGTTCCCCTGTACTGAGGCATATAAAGTTTGCAAGACCAAGGGGCCTCTCTTCCCAATGATGGCTGACTAGTTCATTTTCTGCTACATATTTTTTTAATTCAAATCTGAAAGTCTTCAGCAGGCATAGATGTTTCTATCTAAATAGGCTATTGGAAGTATATAGGAAAAGCTAAGACCTGCTCACCCAGACAGGCTATCATGAAAAAGAATGGAGATTATGTGAGAACTAGAGAAAAGTCCAAGTAAGGAGAAACTCAAGATTCTCAAGTCATTGAGATCCAAATAATGTAGAGACCATAGTTAGTCAGATTGCAGTAGAGGGATGGGAGAAGTGAGGGCAGCAGAAGAGCCCCGAAGTTATGACAAGAAGATATCAGTCTCTCAACTATTGTTTTTATATATAATCCAAACACTTTGTAAAGAGTGATGAAACGTGTGTGTGTTTAATTAAATAATAGAAGCAGCACTTGTAGAGGGTTAATGAGTATTGAAGATGGACTCTGGAGCGTCAGAGGTGACTCTGCATTATAGACCCTTGCTATTCTTGTAGAGGATAGCTTTATGCCCAGGACCCAATCAGTGGCTCACTGTTGCATCTAACTGGTTCCAGGTGATCTGATGCCCATCTTTGGCCTCCATAGATAACTTCACATGTGTACATAAATACAAACACATATCATATAAATGTAAATAAATCTGTACTCTATTCAAGTCTGTTACTGTATTTGGTTTTGGTGTGGTACTCAGGGCCATGTTGTCCACTGAACTGTGTTCCAGACCCTTATTTTCTTTGTAATAAAATAACTGTACCTGTTGATGTGCTATGTTGTAATATCCTGCTGATTCTATTAAGTAGTTTTAGATTGAATACATGAATAAAATCAAGGTTTTTTTGTCTCATTTCATTTAATGAAACATTCTCCAATTTTCCCATATTACCACAATTGACAGTAGTCTGCCATGTTAGTACATGTGCATAAATAAAATTACCTTTAGAATGTATGTCTGCTGGTGGAAGCTAAGGGTGATTTATTTCTTGGCTATTGTGAATAGAGCTTCTCTGAACAAGGGTGTGCATTCTCCCTGCATTGAACTTGGGCTGCAGCTTTACTGCTGTCCTGTCTTTTGAGTGCATACTCAAGAGTCAATTGCTGGATCAATAGGACATTTTGGTGTGACCCTTTGGAGAAGCCTCCATGTTGTTGCCCATAGTGGTTTTGTGTATTTCCATTTCCACCAACTATGCATCAATGTTCTCTTTACGGTTTCCTCAGCAATCGCTCCTTCTTGTCTGCTTTAGAGTATTTGCCAAACTGGAGTGAAGTAGAGTACTGCAGTTTTGGCTTTCATGTCTCTAGTGCTTGGTGCTGTGAGACACCTTTCTATACCTGAGAGCAGTTGGGCTTTTGGATTAAGTCTATTATATTTTCCAAATCTTGTGTACTTGTTTTCAAGTTACTTATTTTGCTTTCAATAGCAGATTACTATGCACCTGTCCATTAATGATTCGAGGAATAGAGTACTTGTTGTGAACTAGCCCTGGAGACTAATTTTATCTCACAGTTAAAACTGATGCTCTTCAGCATCTTTACTGGAATTCTTAGAAGTAATTATTGATCAGTGGAATATTGAAGATTTTATGAAAAGTTAACATATAAGTGATTTTTAAAAAGTACTTTAAACTGATTCAATATTCTCTGCCTTTCTACACACAGTTCAAGACATTGCACAGGACATTTCTAGAATAGATTAGCAGGTCAGAATTTAGAATTTCCTATATAATGAATGTCACTCAAATAATATAGCAACATGGGTTTTCCTCAGTACACAGGAATGTTTTTGTGTAAGCTTCCCCTTTGGAGTAAAATACTCATTTTTCTTTCATAAGAACCAAGAGCTATTTATTGCCAGTGAGCAAGTTCTGAAAGATGACCCCTCACTAATTCCGGTGAGTGAACAGGGCGCTGACTTCTATCATCTCTCTTCTGAGATCACTATGCCTTTATGATTCACTATGGGTCTTTGGAAAATGGAAACGGACTATTAACAGTAATCAATTAGAATATGTTTTCTGTTTATTCTTTCTTTCACCTAAATTTCTGAGGCACATAATATGAAAAACACAGCCAAATAAAGGTGTTTAATGGACCTAATCTTGCATTTTCTCTTTTCAGTAGTATGCTGAAGTTATTCACTGCATGAAATTCCTGTCACAATTATTTCTTGTCACAAGATAATCTTGTGACTTATCTCATACTGTTCTTCCATCCTGGAAAATTATGCACTATGACTCTGTGAGACAGCCTTTGACTAGTTCAGCTCTGTTCAAAATACTGTTGAACATTTCTCTTCCTATCTTTAGATATAAGAATATTAAATTATTCATATATAATTAAGGCATTAAAATCATTTAGCATAATATGAACAGAAAATAGAGCGAGCGGTTGGATGATTGCACTTTGATTTGCATAGATAATATGTTTCTTTGGGGGGTTAGTGGAGTCTAGAGGCTCAGTATCCTTTTCATGTAAATAATTGATGATATTGCTTTGTTTATTCTGGAAGTGAATATTTATTTATTGGTGTTTCCATAAGTTCATAGTTTTGGATAGCAAATACATTTTAAAATTTCAGTTATTGAAAGATTATCTTCATTGTTCTTTTCTGAAGAGCATACTTGTTACAAAATGTATTTACTATAGTTCATCATAGAAACCTTAGGAGCTATTTTATAGACTCTTCAAATAGCCTGCTTTTATTTTTCAGTCTACATAAATAATATTTTGAAAATACATGTTTTTAGATATACTTATATATATGTAACCTTTTGGTAATATATTCTTTTTTGTGCTAATACTTGTGAGATTCTTACCCTGCTTCTGGCCAATTTCAAAGGCTCCTATTTTGGGAGCCTCACTTTTGAATCCTTAAAGTTTTTTAGATCTGCCGTGTCATCTGACACTCTCCCCCATTTACCAAGTCCAGAATGGTAGTCTGTAGTCTTCAATAGTCAATGTTTTTTTCTTGTTTTTATTTCAAATTGTATAGAACATGGAATGTAATCTTTTCCTCCTGTGCTTCATTTCTGCTAACTAG
Seq C2 exon
CACTCCTGTTTCATCACACCTGACATAACTGGACTCCCAACGATACCGGAGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056268-Dennd1b:NM_001166501:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(18.7=100)
A:
NA
C2:
PF0214116=DENN=FE(12.2=100)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: