HsaINT0046713 @ hg19
Intron Retention
Gene
ENSG00000213047 | DENND1B
Description
DENN/MADD domain containing 1B [Source:HGNC Symbol;Acc:28404]
Coordinates
chr1:197614820-197616244:-
Coord C1 exon
chr1:197616185-197616244
Coord A exon
chr1:197614874-197616184
Coord C2 exon
chr1:197614820-197614873
Length
1311 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
GATTTATTTGTATTGATTAGCAT
3' ss Score
3.31
Exon sequences
Seq C1 exon
AACCAAGAGATATTTATTGCCTGTGAGCAAGTTCTGAAAGATCAGCCTGCTCTAGTACCG
Seq A exon
GTGAGTTAAAAGGACATTGGCTTCTAAAAATCACTATTAAATAGGAAAAATAATCACTTATTTCACTATGCCTTTAAGCTTCACTCCAGCCCTTTGGGAAATGGTGAATTTGACTCTTAAGAAAATTAATCATTTGGAATATATAATATTTTCTGTTTATACTATCTTTTAAAGCATAGTTTTATGAAATATAGTACTATTAAAAACTATTCCAAATAAAAGTAGGTTATAGAGACCGAAATCTTTGCATATTCTCCATTTTCAGTAGTAGTAATTTTAAAGTATATTCACAGCACAAGATTTGTCACATTTTTTGGTCCCAAGATCACAAAAGATCTTGTGATTTATCTCCTATTGTTCTTCTACCCTGGAAAATTATAGATTATGACTGTGTTAACTATCCTTGTTCTGACTAGTTCAACTGTGCTCAAATATTGGCTAAAATGTTTCTTTTCTAATCATTAATAATAAGATATTATTAAATATGTCCTTATGTGATTCAGATATTAAATAATTTTGGAGATTAATATGAACAGAAAATAAAACTTTTGATGATTAAATTGCACTTTGATTCTGGGTGGTAAAATTTGGGAACATTGTGGGAAACATGAAGGCATATATACACAATGTATTCTTTATGTAAGTATTCTGATGAACTGTTTTACTTCTTTGAACATTATAGAAGCTAATTAATATTTGGCAGATGTGTAACAATCATATTTTGGGATTACTACGTGTTTAAGAAATTTTAAACATTGAAAAATTATGCTTTATTGCTATTTGCTAAATAATAGGGTGGTTGATGTTTACAAAAGAGATTTCTTGTGACTTACCATAGAAACCCAGCCCAGGAATCTTAGTAGATTTTGATATATTTGGTTAGCAAGCTTTAATTTTTCCAGTCCACCTCAACTAAATGTGTTTTAATAATATATATGTTTATATGTATGTATAGGTGTGTATGTCTCTATATACTGTATATATACACATACGTGTATATGTATATATGTACAAAATAAACCTTTCAGCAATATACTCTTTTTTTGCCTTAACATTTTTTCCCTATTTTAATTTTAATTTTAGGGTCAAATATTTTTAACCAAGTCTTAACTTTTTGTATGGCAATGTAATTGTTAAATCTCATATAAACCCGCTAACTCATTTAAGAATCTCTCAAATTCAACAAATCCTGAATGTCAGTCCATGGCATTTTTTAATTTACTCAATATATTTTTTTCTGATTTTCATTACAAATTATATGTTACCAGTTTTAATTATCTTTTTCATATGTGATTTATTTGTATTGATTAG
Seq C2 exon
CATTCCTACTTCATTGCCCCTGATGTAACTGGACTCCCAACAATACCCGAGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213047-DENND1B:NM_144977:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(9.5=100)
A:
NA
C2:
PF0214116=DENN=FE(18.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)