RnoINT0046432 @ rn6
Intron Retention
Gene
ENSRNOG00000011063 | Dennd1b
Description
DENN domain containing 1B [Source:RGD Symbol;Acc:1308441]
Coordinates
chr13:56120366-56121638:+
Coord C1 exon
chr13:56120366-56120425
Coord A exon
chr13:56120426-56121584
Coord C2 exon
chr13:56121585-56121638
Length
1159 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
GTTTTGTTTCTGCCGACTAGCAC
3' ss Score
4
Exon sequences
Seq C1 exon
AACCAAGAGCTATTTATTGCCAGTGAGCAAGTTCTGAAAGATGACCCCTCACTAATGCCG
Seq A exon
GTGAGTGAACAGGACGCTGCCTTCTGCAATCACTCTGCTGAGATCACTATGCCTTTATGATTCACTATGGTTCTTTGGAAAATGGAAACGGACTATTAACAGTAATCAATTAGAATATGTTTTCTATTATTTCTTCCTTTTCCCTATTTTTCTGAGGCACAATAATATAAAAAACAGACAAATAAAGGTGTTTAATAGATCCAATCTTGCATTTTCTCTTTCCAGTAGTATGCTGATGTACATTCACTGCATGAGATTCCTGTCACAATTATTTCTTATCACAAGATAATCTTGTAACTTATCTCATACTGTTCTTCCTCCCTGGAAAATTATCATGACTCTGTGAAACAGCTTCTGACCAGTTCTGCTCTGTTCAAAATACTGTTAACGTTTCTCTTCTTAACTTTAGATCTAAGACAATATTGAGTCAATCCCTATATAATTAAGGCATTGACATCATTAGCATACTGTTAACAGAAATAGAGTGGTTGGATGATTGCAGTTTGATTTGGGTAGACAATGTTTTTAGGACACTGGAATGTAGAGACTTAGTATCCTTTTCATGTAAATATCTGGTGCTATTGCTTTGTATATTCTGCAAGTTAATACTTATTTATTGGTGTACCATAAAGTCATAGTTTTGGATAGCAAATACATTTTAAAAATTTAATTATTGAAAGATTATCTTTCATTGTTCTTTTCTGTACAAGTATACTTGTTACAAAATGGATTTACTAGAGCTCATCAGAGAAACCCAGGAGCCAGTAGATTTTATAGATTCTTCAAATAACCTGCTTTTATTTTTCAGTCTATATAAGTATATTTTGAAAATACATGTTTTTATACATATATGTATATGTATATGTATGTATATGTAGCCTTTTGGTAATATATTCTTTTTTGACTTAATACTTGTACAGATTCTTACTCTGCTTCTGTTCAGTTTCAGAGTCTATTCTGGGACCATCACTTGTTGAGTCAGACTGTCATTAGTAAAGTTACTTAGATCTGCCATGTTATATAAGACTCTTTACATTCACCAAGTCCAGAGTGGTAGTCTGTGACCTTCACCAGAAAGTGCTCTTTCTTATTTTGATTGCAAATTATAAGGGGTATGGAATGTAATCTTTTCCTGCTGTGTTTTGTTTCTGCCGACTAG
Seq C2 exon
CACTCCTGTTTCATCACACCGGACATAACTGGACTTCCAACCATCCCGGAGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011063:ENSRNOT00000035129:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(9.5=100)
A:
NA
C2:
PF0214116=DENN=FE(14.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]