DreINT0008938 @ danRer10
Intron Retention
Gene
ENSDARG00000063578 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:HGNC:2855]
Coordinates
chr4:4640227-4640875:-
Coord C1 exon
chr4:4640807-4640875
Coord A exon
chr4:4640296-4640806
Coord C2 exon
chr4:4640227-4640295
Length
511 bp
Sequences
Splice sites
5' ss Seq
AAAGTACGT
5' ss Score
7.99
3' ss Seq
TATTTTCTCTGTCCTTGCAGAGT
3' ss Score
11.38
Exon sequences
Seq C1 exon
CAGAATGTGTTGCGGCACCACTGGGTTCATCGTCGCCGACAGGAGGGAAAATGTCGACAGTGCGGCAAA
Seq A exon
GTACGTCACACAAACACAGCCTACTTCATCTACAGTGTAAAACATATCTGTGAATTAAGAGCTTTCAGTTTACTTACGGTTGTGAATTGCATTATGGGATGTTAATCTCTGCTCTGTATACCTTGGATGTTGAAAATTCAACTTTACAGTTCAACAAAGTGACTTTTATCGACATATTCGTAGTTTGAAATAATATAATGTATAAGAAATAATATGTAGATAGATCAATAAGTTTGTAAAATAAAAAAAAATGCACGGGCAGTTTATTACAAGGTTTTTGTAGTGTATTATGCAACACCAACCCAGACAATATATCACTTTAAACTATTAAGAATGTTAATAAAAGTTACTTTTTTCATGGTTAATAGATGTTGGAAGAAAGCTCAAGCTACCATAATGCAGTTTAAAAGCACAAATAAAAAGGGGAACATTAAAACAGCTAGTTTATGGATATTATTTGTGTACAGAGACAAGAACGAGTCTTAATGCAGTATTTTCTCTGTCCTTGCAG
Seq C2 exon
AGTTTTCCACAGAAGTTCTTCCACAGTAAGGAGATCGTGGCCATCAGCTGCTCCTGGTGCAAACAGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063578:ENSDART00000093005:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PU(28.8=73.9)
A:
NA
C2:
PF0013017=C1_1=FE(37.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]