DreINT0009142 @ danRer10
Intron Retention
Gene
ENSDARG00000061486 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr5:27759583-27761867:+
Coord C1 exon
chr5:27759583-27759800
Coord A exon
chr5:27759801-27761645
Coord C2 exon
chr5:27761646-27761867
Length
1845 bp
Sequences
Splice sites
5' ss Seq
GCGGTCAGC
5' ss Score
3.35
3' ss Seq
GTGTTTCTGTCAATATGTAGCTG
3' ss Score
7.36
Exon sequences
Seq C1 exon
GTGGCACGTCTGGAGAGGAATTTCCACCAGAGCAAACGTGAGCTTGAACGAATCCAAAATGAGCTTGGCGCCATCCAGAAAGAACTCAGAGCTCTTGGAGACAAATATGAGGGAGCCATGACAGAGAAACAACTCCTGCAGGAGGAGGCCGAGGTCATGGAGAGAAGACTCGTTGCTGCAGACAAACTCATCTCAGGCCTGGCATCAGAGAACAAGCG
Seq A exon
GTCAGCTTCCTCTCATCATTGAACTGTTTTCTCAAAGCTAAATGACATAATTTTTTTTACCATACTATGTACAATTTTTAAATATAGGAATAAATAGTGAGTATAAGGGGTAAGCAAATTAATCTTGTGTTTTCTTTAGACGTAAGATTATTTTGCTTACCCCATTGGCAGATTATTTTGCTTGTTTTAAGAAAAAAATTCACTTAATATTGGCATAGTATTTCTCAAAACAAGAGAATATGTTTTGCATGTCTAGAAAATTATTCTTGATTTAGAAATTTTTAGATATTTGGACTACAAACAAAACAAACAAATCTAAGTAAGAAAAGCATTTTTTGCAGTGTGATTGTTAAACATGTGTACAGTATGTTCATGAAATCCAATCATTCGTTAATACGGTGACACTCTTTTATAATTAGCTTAATCCCTTACTTAATCAAAAGTGTGACACTAAACCACAAAACTAGTCTTATGCTAAACAGGTATGTTTCTGGTAATAGCAAAAAAAATGTAAGCCTGTATGGCACAGGTGTCAAACTCCATTTCTGGTGGGCCGCAGCTCTGCACAGTTTAGTTCCAACCCTAATTAAACACACATGATCAAATTAATTGCTTTAGGCTTCTCAGTAAACATTTTAGTGTTTAATAGATGTCTAATAAACGTAAACATACAGTAGACAGCTTAAAACAAGGCTAAACTTAACTAATAGACATCTAAGAATAGCCCAAAACTAGACTAGTCATCCAATATGTGTAGTCATTCATTTTTGTTTATCTGTTTATACTTGACTAGTTTTGGCCTATTCTGGCGAAGTTTAGACTTTTCCTCCAGGAATTGAGTTTGACACCCTTATGGGTTAAAAATATACATTTTTCCTTTATGCTGAAAATCATAAGAATAATGTAAACATCATGATCTATTAATATATATATTTTAAATTGTCCTCTGTAAATAATTTAAAAAAATCATTAGTAATATCCATTAAAAAATACAATTTGTTCAACTTTAAAGGTGAATTTCTTAATGTTAACATTTTTTGAATCTTCAGATTCCAGTGTTTCAACTACTTGTATCTCATGCAAACCTTGTTCTATCCTAACAAACCATATCCTAATGGAAAACGTATTTATTCCATTTCAAATGATGTGTACTTCTCAATTTTAAAACATCTAAGTTATGGTGGCAATCTTTCTGTAAATCTGAAATACTTTTTTTTCTATTATCAGAATTGCTATAAAACTAATAGGATCAGAAACCTTCACCAGCATTCAAACACTCTACGAGCAATGCACTGTGAAAAAAATTCAGAACAGTCCATCTCCGTCTGGCAAAAGATCATAAAATGATCGATAGTTTGCTTATGTTTTTCTTGTATGTTATTCTTTTGCATATTTGCTTATTTTATCATTTTTATTGTGTCAGAACTTGCTGAAGTGCTCTGTGAGTCCACAGAAAATTTCCCCTTAAGGGACGATAAAGTATACAAACAAACAAACAAACAAACATAAACTTATGACTGTCATCAGGATTACAAATGCAAAAAATAAATAAGAAATAGGCCATACCTATGATAATAAATATTTAATAATAGTTTTTAGCCAGTTACAAAATGCCATGCTATTTTTTTTTAATGGCTTCAGTGTACGGCAGTAATCTATCACTGTTAGGTAATTTTGACAGATCAGCTTCTCTTATTTTGTTCAGTTGTTCTGCAGGTGTACATTTCCTCCACACTCACTCATTTTTAATCACTTTTTGTCTGACTAACATTTGAAACAAATCAAACATCTTTACTAACAATTTCACAAAATTTGGTTCTACACTGTGTTTCTGTCAATATGTAG
Seq C2 exon
CTGGATAAAGGACCTGGAGGAGCTGAAGCAGCGGCGAGTGCGTCTTCTGGGAGACTGTCTAATCTGCGCTGCCTTCCTCAGCTATGAAGGAGCCTTCAGCTGGGACTTCCGTAACGAAATGGTGTATAAGGTATGGCAGGCAGACGTCCTGGAAAGAGGCATTCCTCTGAGCCAGCCTTTCCGAATAGAAAACCTGCTCACTGATGAGGTGGAGATCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061486:ENSDART00000135878:51
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(21.3=100)
A:
NA
C2:
PF127772=MT=PD(14.5=65.3),PF127812=AAA_9=PU(3.9=12.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAAACGTGAGCTTGAACGA
R:
GGAATGCCTCTTTCCAGGACG
Band lengths:
353-2198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]