MmuINT0050625 @ mm9
Intron Retention
Gene
ENSMUSG00000038011 | Dnahc10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:125297552-125298151:+
Coord C1 exon
chr5:125297552-125297769
Coord A exon
chr5:125297770-125297929
Coord C2 exon
chr5:125297930-125298151
Length
160 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
GGCCTTCCTGTCCCATGCAGGTG
3' ss Score
10.46
Exon sequences
Seq C1 exon
GTGGCCAGGCTGGAGCGGAATTTCTTCCTAACCAAACGGGAGCTAGAGAGGATCCAGAACGAGCTGGCAGCGATCCAAAAGGAACTGGAGGCTCTGGGGGCCAAGTATGAGGCCGCCATCCTGGAGAAGCAGAAACTGCAGGAGGAGGCAGAGATTATGGAGAGGCGGTTGATCGCAGCGGACAAGCTCATCTCTGGGCTGGGCTCAGAAAACGTCAG
Seq A exon
GTGAGGGCATCACCCGCCTAACGAGGGGAGCCGTAATCTACGCATGCTCCAAGGAGCGGTAATCTATGCATGCGCCAAAGCACTAAAGGCGTCCGACGTAGGTTCCCGTTGGTCATGGGCAGAAAGGAGCTGCTCATGGTGGCCTTCCTGTCCCATGCAG
Seq C2 exon
GTGGCTGAACGACCTGGATGAGCTAATGCACCGGCGGGTGAAGCTGCTAGGCGACTGCTTGCTCTGTGCGGCCTTCTTGAGCTACGAGGGCGCCTTTACCTGGGAGTTTCGTGATGAGATGGTCAACCAGGTGTGGCAGAACGACATCTTGGATCGCGACATCCCCCTGAGCCAGCCTTTCCGACTGGAGAACCTCCTCACAGATGATGTTGAGATTAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011-Dnahc10:NM_019536:60
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(21.3=100)
A:
NA
C2:
PF127772=MT=PD(14.5=65.3),PF127812=AAA_9=PU(3.9=12.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCTGGAGCGGAATTTCTT
R:
CGGTGCATTAGCTCATCCAGG
Band lengths:
246-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: