GgaINT0008967 @ galGal4
Intron Retention
Gene
ENSGALG00000003170 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr15:4867356-4868195:-
Coord C1 exon
chr15:4867978-4868195
Coord A exon
chr15:4867578-4867977
Coord C2 exon
chr15:4867356-4867577
Length
400 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
TCCCCTTCTTTTTCTGTCAGGTG
3' ss Score
11.22
Exon sequences
Seq C1 exon
GTAGCAAGGCTAGAACGGAACTATTACTTAAGTAAGAGAGAACTGGAAAAGATAAATGCAGAGCTATCTACACTTCAGGAGGAACTTAAAGCTTTGGGGAACAAATATCAAGAGGCAATAAAAGAAAAGCAACAGTTACAAGAAGAAGCAGAGATTATGCAGAGAAGATTGGAAGCTGCTGACAAGCTCATCTTCGGCTTGAGATCTGAGAACAAGAG
Seq A exon
GTAAGTGTAGATTCAAAGGGGAATGTTCTTGACCTCAGAGGATCATTTGCCAGGAATAAAATCTATCAAAATGAGATATTTTGGATGATTTGGATTTTTGGAAATGCCTTTCTCTGATTTTTCTTTTTTTCTTCCTTCTGCTAGGAGTTAATATGCATTCTGACTACTCTTCATTAGATCTTGGAAAGTAGTAACAGCGAAATTTTAATGCAGAACAAAAAGGTTTACTAGGGTTACAAGGAAGATGGTTCAAACCTCTCAGTGTCATCACAATAACTGAGAGAACAGCTGACTGTAAATTCTGTGGTTGTCTCAATCAGTGGATAAAGTAGCAGCAGTTGGAAAAGAATCCCCATCCCCTGGCACAGATTCACCCAGGATCCCCTTCTTTTTCTGTCAG
Seq C2 exon
GTGGGCAAAGGAACTAGAGGAGCTCAAAATGCGAAAGGTGAAGTTGCTTGGAGATTGTCTACTCTGTGCTGCCTTTCTGAGCTATGAAGGAGCATTCAGCTGGGAGTTTCGTAATGAGATGATTTATCAAGTGTGGCAAGAAGACATTCTTTCACGAGAGATTCCTCTCAGCCAGCCTTTTAGGTTAGAAAGCCTCCTGACTAATGAGGTGGAGGTTAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170:ENSGALT00000005023:59
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=PU(28.6=95.2)
A:
NA
C2:
PF127772=MT=PD(70.0=65.3),PF127812=AAA_9=PU(3.9=12.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGGAACTTAAAGCTTTGGGG
R:
CCACCTCATTAGTCAGGAGGC
Band lengths:
354-754
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]