GgaINT0008967 @ galGal3
Intron Retention
Gene
ENSGALG00000003170 | DNAH10
Description
NA
Coordinates
chr15:4914018-4914857:-
Coord C1 exon
chr15:4914640-4914857
Coord A exon
chr15:4914240-4914639
Coord C2 exon
chr15:4914018-4914239
Length
400 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
TCCCCTTCTTTTTCTGTCAGGTG
3' ss Score
11.22
Exon sequences
Seq C1 exon
GTAGCAAGGCTAGAACGGAACTATTACTTAAGTAAGAGAGAACTGGAAAAGATAAATGCAGAGCTATCTACACTTCAGGAGGAACTTAAAGCTTTGGGGAACAAATATCAAGAGGCAATAAAAGAAAAGCAACAGTTACAAGAAGAAGCAGAGATTATGCAGAGAAGATTGGAAGCTGCTGACAAGCTCATCTTCGGCTTGAGATCTGAGAACAAGAG
Seq A exon
GTAAGTGTAGATTCAAAGGGGAATGTTCTTGACCTCAGAGGATCATTTGCCAGGAATAAAATCTATCAAAATGAGATATTTTGGATGATTTGGATTTTTGGAAATGCCTTTCTCTGATTTTTCTTTTTTTCTTCCTTCTGCTAGGAGTTAATATGCATTCTGACTACTCTTCATTAGATCTTGGAAAGTAGTAACAGCGAAATTTTAATGCAGAACAAAAAGGTTTACTAGGGTTACAAGGAAGATGGTTCAAACCTCTCAGTGTCATCACAATAACTGAGAGAACAGCTGACTGTAAATTCTGTGGTTGTCTCAATCAGTGGATAAAGTAGCAGCAGTTGGAAAAGAATCCCCATCCCCTGGCACAGATTCACCCAGGATCCCCTTCTTTTTCTGTCAG
Seq C2 exon
GTGGGCAAAGGAACTAGAGGAGCTCAAAATGCGAAAGGTGAAGTTGCTTGGAGATTGTCTACTCTGTGCTGCCTTTCTGAGCTATGAAGGAGCATTCAGCTGGGAGTTTCGTAATGAGATGATTTATCAAGTGTGGCAAGAAGACATTCTTTCACGAGAGATTCCTCTCAGCCAGCCTTTTAGGTTAGAAAGCCTCCTGACTAATGAGGTGGAGGTTAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170:ENSGALT00000005023:55
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(21.3=100)
A:
NA
C2:
PF127772=MT=PD(14.5=65.3),PF127812=AAA_9=PU(3.9=12.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGGAACTTAAAGCTTTGGGG
R:
CCACCTCATTAGTCAGGAGGC
Band lengths:
354-754
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]