DreINT0009170 @ danRer10
Intron Retention
Gene
ENSDARG00000094282 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr16:19404590-19405126:-
Coord C1 exon
chr16:19404962-19405126
Coord A exon
chr16:19404731-19404961
Coord C2 exon
chr16:19404590-19404730
Length
231 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCA
5' ss Score
7.87
3' ss Seq
ACAGTGTACTGTTTACACAGGCT
3' ss Score
5.31
Exon sequences
Seq C1 exon
TTGGAGCTGAGTACTCAGCAGAACTTGTGTCAGATTGAGCTGAAGAGACTTGAGGATGAGCTGTTAAGCAAACTGTCTGCGGCAGAGGGAAACTTCCTGAGAGATACAGCCCTAGTGGAGCAGCTGGAACACACCAAGAACACTGCCAGACACATCCAGAACAAG
Seq A exon
GTACCATTTTTACTGTCCAGTTACCTCATTTTGGTTTTTGCCAGTTCAGGTGTCACTTTTGCATTGTTTGAGGAGAAGTCTGAAAGAAGTATGATGGTTGTAAAGTAAAAGACTGAAATTTGAAAAGACAATCAGTCTTCGTTCCTATAGCCTGTTATATTAAATACTACTGTATAATTAAAACTTGTACCATATGTAATTGTATATTTCAACAGTGTACTGTTTACACAG
Seq C2 exon
GCTGTTGCAGCTCGAGAGAATGAGATAAAGACCAACGAGGCACGAGATCTCTACAGGCCAGCAGCTGAGAGAGCCGCACTGCTCTACTTCATTATTAAAGAACTTCACAATGTTAATCCCATGTACCAGTACTCCCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000094282:ENSDART00000138744:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.145 A=NA C2=0.149
Domain overlap (PFAM):
C1:
PF127812=AAA_9=PD(22.8=94.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCAGCAGAACTTGTGTCAGA
R:
TGAGGGAGTACTGGTACATGGG
Band lengths:
292-523
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]