RnoINT0048701 @ rn6
Intron Retention
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:145829498-145832507:-
Coord C1 exon
chr6:145832343-145832507
Coord A exon
chr6:145829639-145832342
Coord C2 exon
chr6:145829498-145829638
Length
2704 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
ATCATTTGATCCCATTACAGGTG
3' ss Score
8.04
Exon sequences
Seq C1 exon
CTAGTTTTGACCAAGCACCAAAACGACTTTAAGATAGAGCTGAGGCATCTTGAGGAGGACCTTCTCCTGCGCCTCTCTGCTGCAGAGGGGAGCTTCCTGGATGACACGGACCTGGTAGAGCGCCTGGAGACCACCAAGGCCACTGCAGCAGAAATAGAGCACAAG
Seq A exon
GTAAGAGCAGCAGAGAACCCCTGGCTGGCTCGGCACTCTGCTGGAATGGAGCAGACGGCAGCTGTCAACACAAAACGCAGTTCTCCATTCAAAGGAAGTAAGAGTTTATTCTGGAGCCAATTATGAGTGGCCATGGCCTAGGGACACAGATTGAGGTTACCCCGAAAACTGTAACCCAATGTGGTAACAGATTCATGGTGTATTTATAGTAAGAGATAAAAAGAAAACAATTAACCAAGGCACTTGCATCAGGTCGATGGGTTATATAGCAAAACGGGGTAAATATACTATAGGTCTCAGACGCTACCTAGTGACATTCTCAGTTTTGAAGTTGGTAGAAGCTAGTGGTTTGCTAAGAGTCATTTTAAAGGTTTTTACAATCTATTTATTTTTGTTTTATGCCCATTAATGTTTTGCCTTCATGTGTATCTGTGTGAGGGTAGCATATCCTCTGGAGTTAGTTACACAGTTGTGAGTTGCCATGTGGGTGCTGGGGATTGAACCCAGGTCCTCTAGCTGGGGATCCAGTGATCTTAACTGCTAGTGAACTCTCCAGCCCCATTTTAAAGGTTCTTGATAGTCACTAGGTCAGACATGGATACACGGGCCATGAATGGCTTTAAAGGAACTAAAAATAACAAGAGATAATTTGGCTCTCGTGTTAAACATTTTAACTCTCCATAATCAGGAAGTTCTAGCCTTGGGCCTTGGAGAATCTTAATGTGCGTGTGTGTACCTCTTAACAGCACCACCCACTGAGAACTTCAGTTTGCACAAGGTAATCAGTGTTTGGTGACTCCTCTAAGAAAACAGGTTTAGTGTATAATTTAGGCCACTTAATAAACAGCACTCAATACTTGGGCTACTAGTACAGGATTAAGAATGGAAATGGTTCAATTGGTACTTCAAGTTCCATTTAATTATATTAATATTTCTTGTGTGACCAATGTTGGAGCCTCCTGGTTTATATAGTAGAAACTATAAGAAAGGGGTGAAGCTAGGTTCCAAGAAATATCCCAGCGTATTGAGTTTTTAGAGAAATCTTTGGAACTGAAGTTTTATGTACAAGCCTCTGGTGGCAAGAACCAAGCAAGGAATGGTCCCATGTGGGTCTCAGTGCTGCACCATTTACCCTGGGAAAATGACATTTTTCAAAGGCCAATTAGCCATTTCCCATGAACAGCATCCTAGTAAGTGAGCAGCCTAGATCACAATGGGCTGTGTGTGATGTGCGCACTCTGGACTTGCACAAGTGGCCAGTAACTGTTAACATTGTGCAGTTTGGATCAGAACTAGACTCTTCCTTGGTTTGTGGCATATCCTCCTGACTAAGTAATCTGCTAATTACCCAGCAGAAGCTGTGTCGCCATACACCCAACGTATGTGCCTTAAATTAAGCAAGGCAATAGAATCCCAAATTACTCTCTTCTTTTAAGTAAGTGTTTGCTAGGTGGCTCCTAAGATAGTAAAGATTAGGGCAATTAAGTAAATTAAGGCTTTGAGTTAACTTCCTATCTTCTTAATATACCACCATGAAACCACAGCCCTCTCTGCCCTGTCTGTCATTCACACACATCATGAGTCAAGACCATAGAAATGTTTAGAGGGAAATATTGTATCACTTAAAGCTGCAGTGGGCCAGCAGCATGTATTCTTATAGGAAAAAAAAAAGAATAGATTTGTACCTGGTTATAGAAATAGGTATTTTTTTATCCTTAAATAAAAATGAGTCATTGATGGTCAGATATATATATATATATATATATATATATATATATATATAATCTCATTAAATGTTCCCAGGAGCTAGCAAGTTAGAATAAGTGGGAATATTTGAGTATATGGAGAGCTGGTATTGTTGGAATTTGATGGCTGGGGGAGCCCTCATACAAAGGCCGTTTAGGACGCGTGGATATTGCCGGTGCTGTTGACCTTGGCTGCATTTGTGGATCTCGTTCCCTAATAAAACCACTGGCACTGAGTTGACCCAGCAGACTTTTAAGAGCCATCCCTGGGAGGCAATATACCTAGGTTATTAAGGCCTGAATGAGAGAAGAGAGGCAGGAAGGTGACATTATTCAAAAGCAGATTCTGCAGAGGCAAAACAGTTAAGGTCATTTAAATCTACAGGGTCGGAAGCAGCCAGCGCCCTCTCCCTTCCCGGTGGAATGCAGTTCATGAGAAAAGGTTATTTGAAAATAGGAATTTAAGAATTTCTTTAAATGTTGATATTTATTATTTGGATATGTACGTACCACACTGTGTGGAGGTCAGAGGGCGGCTCTCCAGAGTTAGTTCGTTTTCTACCCCCACCTTGAGATCATAGGTTCTTGGACTTGTGTGGCAAGCACTGTTTCCCGTGGGTCATCTTGCCGGCATGGCCCTAGTAATTTCATCAAAGCTCATGTCTACAGAAGTCAGGCCTGTAATATACTTTACTTCCTTTGCTTGTTTTGCTCTACTGAGTTGGGGCCTCACTCTCTGCTGCAGGTTGTTCTTGAAGGAGCACATTATGGTATTGCAGACCAGACCCAAACTCAATGCTCCTCAGCCTCCCAACTACTGGGAATACAAACGTGGCCACAGCACCGGGCTCAATGCGCAATAGTTGCCCATTTCAAACATTCCTGAGAGTCCTTCCATCGATGGCATGTGTTTAGAAAACACAGAGATAAGTTGCAGCTATCATTTGATCCCATTACAG
Seq C2 exon
GTGATAGAGGCCAGAGAAAATGAGAGAAAAATCAACGAGACCCGTGAGTGCTACAGACCGGTGGCAGCAAGAGCCTCCCTTATGTACTTTGTTATCAGTGACCTCCGGAAAATCAACCCCGTCTACCAGTTCTCTCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451:ENSRNOT00000007233:74
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=NA C2=0.021
Domain overlap (PFAM):
C1:
PF127812=AAA_9=PD(22.8=94.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]