DreINT0010835 @ danRer10
Intron Retention
Gene
ENSDARG00000057004 | FGL1
Description
fibrinogen-like 1 [Source:HGNC Symbol;Acc:HGNC:3695]
Coordinates
chr10:24717448-24718724:-
Coord C1 exon
chr10:24718534-24718724
Coord A exon
chr10:24717907-24718533
Coord C2 exon
chr10:24717448-24717906
Length
627 bp
Sequences
Splice sites
5' ss Seq
CAGGTGATG
5' ss Score
5.99
3' ss Seq
ACCTATTTTTTTATTTACAGGTG
3' ss Score
11.42
Exon sequences
Seq C1 exon
GATAAATACAGGCTGTACTATGGGATGTACAGTGGTCAAGCAGGAGATGCCTTGTCCGGAGGAGCCAATATGGTGGAGCAGTGGTCAGCCTCCCATAATGGCATGCAATTCAGCACCAGGGACCAAGATCATGATCGGTACCTGCAGGGAAGCTGTGCTGCAGAGAACAAGGGGGGCTGGTGGTATAACAG
Seq A exon
GTGATGCCAAGGGATTTCTGAGTTTTAGGTCTTAAAAGAATACTCCATGTTTTTTGACAATAGACAAATTGGACAATTTTCATAGAGTTAAACAGTTTAGTTTTACCCTTTTGTATCCACTCAGCCAATTTCTGGCTCTGATGGAAGCACTTTTAGCTTAGCATAGATCATTGAACTGGAATAGAGCATTAGCAGCTCGCTCATAAATGACCAAAGAGTTTAAGTCCTTTTCCTATTTAAAGTTAGACTCTTCTGTAGTAAAATCATGTACTAAAATGTTGCTATTTTCAAGGCCTTTATGGCTAGGAACTTCTGACGTAATATTCAAGGAATTTTGCTGCCATACCACATAGGGCATCTATTCCAATTCAATATATATTTCGATAATTGAGTTTTGCAATTATATGAATGCTATTATTTGATTAATTAGAACAGTTTGTCCTTCCAAAATTAGATTAGTAAATTATGCTAAGCTAAAAGTGCTCCCACTCGACCCAATGATGAGCTGAATGGATTCAGAAATGGTAATTGTTGGTTTTATGATTAAATGGTTTATCTCTAGGGTACTTCTTCCCCAATTTTCCAAAAATATTTGTTATTTTATGATACCTATTTTTTTATTTACAG
Seq C2 exon
GTGTCATGCTGCCAATCTTAATGGGAGATTTTACAGAGGTGGAGAGTACAAGGCCAAATATGACAATGGTATTGTTTGGAGCACCTGGAAAGGACTGTGGTACTCCCTCAGACACACAGTCATGAAGGTCCGGCCCAGCTCCCACATGGACAGCGTGGGTAGTGGAGGAGGGCCCACTGAATAGCGAGGTTGCTAAGCATCTTGTTATACACATTTGTGAATTATACTGTGTTAACTATAAGATTTACTGTGGTTTATTAACTTTTCAACCACATGACTGTCGAGCATAGAAAGAATCTTGGAGGGATGAAGGAAGAAAGTAATCTTGGTAGATTTGATGAATCCACCTGTTATTTTTAAAATAATCATAAATAATATAACTTTGCATGCAGCCATATAATAGCACTTGTAGCATACAATATGCATATTACATTAAAACAGCATTTTTACATGTGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057004:ENSDART00000079566:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.047 A=NA C2=0.230
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(27.5=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=PD(20.1=74.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGATCGGTACCTGCAGGGAA
R:
TGCTCGACAGTCATGTGGTTG
Band lengths:
348-975
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]