HsaINT0064037 @ hg19
Intron Retention
Gene
ENSG00000104760 | FGL1
Description
fibrinogen-like 1 [Source:HGNC Symbol;Acc:3695]
Coordinates
chr8:17721900-17726244:-
Coord C1 exon
chr8:17726057-17726244
Coord A exon
chr8:17722261-17726056
Coord C2 exon
chr8:17721900-17722260
Length
3796 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGA
5' ss Score
5.11
3' ss Seq
TTTTTTCTCCCTTCCACTAGGTG
3' ss Score
12.62
Exon sequences
Seq C1 exon
AATTTCTACGAGTTGAATATTGGGGAATATTCTGGAACAGCTGGAGATTCCCTTGCGGGGAATTTTCATCCTGAGGTGCAGTGGTGGGCTAGTCACCAAAGAATGAAATTCAGCACGTGGGACAGAGATCATGACAACTATGAAGGGAACTGCGCAGAAGAAGATCAGTCTGGCTGGTGGTTTAACAG
Seq A exon
GTTTGATGTCTTATGAGCATAGTTGTAATGGAGTTGATGATATCTCACTGATAGACATTAATTATCAATATAATATGTATGGTAATGTTAGTCTTTATTTATAATATTAGTATTATTAAGTAATCATTCTCATTAGAATTCTTCAGCAATGAAGTCGTTTTGAGGATTTGTTCATTGTGTACATTAGTAAAGTGTAAATGTCATAGAAATAAATTATTACTTTTACAAAGATCATTTGCAAACTGAATTATGGATGAGTTATAAATAGAAGGCCACAAATTCACACAAAGAAAGAGAGAGCATGTATATATATGGAGACTATTTGGCATCCTAATAACCAACTAGTTCTTCACCTGACCATATCACACAAAAGAGCCACCGTTATTGCTGTAATGCTTCTGTATAGTACTACTTTTCAATCACTATGGCTTTCATTAATTCATTGAGTCTAAGCCTCTCCCAATACAGAAATTTCCTTTACAATAATCCAGAAACCTAATTCTACCCTCTGACTGAATACATTCATGTTACTTTATCAGCAAATTCATTCCGTTTTTGATTGTATATAGTTGCTTCTTTTTTTACTGATACAAAATATTTTATATATTTCTGGGGTACATGGGCTAATTTTTGCATTTTTGGTAGAGATGGGGTTTTGCCATGTTGCCCAGGCAGGTCTCGAACTCCTGGCCTCATGTGATCCACCTACCCCGGCCTCCCAAAGTGTTGGGCGTGAGCCACCGCACCCTGCCGAATTCATAAGTTTTAAATTGCATGTCATTCTGAGCAGAGATTCGCACCATTGGATTCTTTCTGCCCAGGAGGTGGGTCACCCCTCTGTCTAGCGTATCCACGCTGAAAGCCCTCCCTGCCCCAAGACACTTAGTAGAAGTCTGAGTTATCAGATCCAGTGTTGGAGTTTCATAGTGCTCGTGTTCGAATCATGCTTATTTGATTTAATAATGGTCCCAAAGCACAAGAGCTGTAATGCTGACATATTGTTATATAATCATAATCTTTTATTATTAGTTGTTGTTAATCTCTTACTGTGTCTAATTTATAAATTAACTTTGTCATAGGTATGTATATTATAGGAAAAAACAGAGAACTACTATAGATGGTTTTTTTCCTTCCTACACCCAAAAGATTTTTCCCCCTAGCGTTCTGAAATTTTACAGTGACATACACTGTCGTGGTCTTCTTTTGGTTTACTGCAGTGGGTACTCAGTGGTTCTTTTGAATCTATATCATGTCTTTCAGTTTGGTAAATTTTATTTTCTTTATCTGCTCGTTACTCACTTCGTAGCTGTTTCGGTTATCAGACTGAAAAAGCATAGTATCAATATATAGAATTTGGTATTATCTGTAGTTTCAGGCATCCACTAGGGGTCTTAGAACGTATCCCCTGCAGATAAGGGAGTACTACTGCTGTTGTAAAAATAGTCATCTTTTCTATATTTTGCTTTTTTAAAAAAACATTTGAGTCCATTTAAGATTTGATCATTTATAAAGGAACTGGAGTATTTCCAGCAGTGTGAAGGAGAGAAACAAATTTCACTCTCCTGCTTTGCAAATTGAAGGTGATGATGGTGTTTTCCTTAGTGGTTTTCCTGTTATTTTAAAAACCGTCTTCTTCACCTGTTCCTACTCCTTTCTTTCCCCCTTGTTCTTCTAAGTCAGCATGACATAAAACTTAACGTGTAATTCATGAAGTCATCTGCAAGCATCACCAATGTTTGATTTTGAAAACAATTCCATATACAGAAATAATTACTAATAGTATCCTGAGATCAAAACCATGTACTTTATCCAGCTGACTGGCTTCTAAGGCATCTGAATGAAAACTACCATGTATATTAATGTGGGCAAAGGAACGATTTACCTGACTTTAAAGAAATGGGTTCAGGGAGCACAAAGAAAGGCCATTCATTAGGTGGAGCCTGCCACAGAGCCCACATTATCCTTGGAATCAAAGGGGTTGATAAGGCTGTGCAATTGGAAAATCAGTAGGCATTAAGGGAGAGAAAGTAGATTGTTTTAGAAACTTGGTGCTACTTCTACCATGCCTACTATCAGTGAGTTCGACTATCATCTTTTCTTCCTTCTTACTGTTGCTTTTTTTCTGTCCCATAGTTCTTCTAATTTACATGAAATGTTGGCACTTCATAAATATTACCCACCTATAAAATGTTTTTTTCCACATAGCAAACCAATCACTGCGAGTTGATGTCTTTTCTTTGTTAGTGTAGCATTTCACGTGAGTGTTCACAGCCACTTCTTCACCAAGGAAGACCCAATCATCCCCTAACCTAGTTTCAAATCCAGGCTGTTCTAAAAACTAAACGATGCTAGAAAACTGGTCTCAGAATAGTGAAGGTTTCTTATGTTCATCACAGAGTCAGTTTCCTAATGGGATTCAAATGATAGACCAAATATAAAAATATAGTTAGCAGATGTCTCTAGATAGACAAATATATGCCAAAATATATATTCTGGAGACTCAATTTACAGTATTTTCTTTTTTTAACATTACTTTCCATGCTGTTTTAAAAACACAGTAGGCTTTGACATTTGCAGACTTGACATACATATTTTCAATTAATTACGTCCATTTAAGTTAGGAGGACTTCGAGAACGCTCAGTAGGAGTGAATCATTAAGCTGATAAGTGATTCAAGCCAGCCACTCAGCCTTTACGGGTAGATTATATGCTTTTTTGATTCAATAATTTGGGTTTTTCCATAGATGTTCAGAACTACCTCTTGTGAATGTTCTCCTTCTATCCTAATTCTGACATCTTTTCATTAATTTTATCAATAAAGAAGTATATGGCAATTAATTTCATAACAACACACATAAACTTATTGCATACTGTTACATGTAAATTATACATATCAAGGACAAAATTTACAGACTCCAAAGGAGGAAAGAAACATTTTTATATTGTCGATAACCTAACCAGCTTATCTAGATTGGTGCAATATATGTAAAAAATTAACTCAGCAACTAGGAAAAAATGATTATTGGTTGATGGGTGGCAAAACTTTAAATGGTGATTTAGGTTTGTTTGCTTACCCTTGAGATTGAAATAACTGATAGGCTAGCAATTTAAAGAAGGGGACATACGGAGTTTGAATTATGAAAGCTAAGTCTTAGCAGCAGAGGAATGAACGTGTGAGTGCAAATTATCCAGGAAAGCCAGTAGTAGAGCACCTTGCCCACGACTTGCTTTGCTGACACTCACCTTAGCTCTTGTTAAGTATGAAATTAACACTGTTCTGAGTCAGGAGGTTGTAAGGCTGGAGGTTACAAGGATGCGTTTTTGTTTGCTTGTTTTAATTTTTTGTTTAAAGAAAATCAAAAATTGAAATGCTTATTTTTCAATGCACTGTGAGTGGCCTGGGTTGTATTTTCAGATTTGTAATGGCAGTAAAACTCACCATTTTAAAATACCCATCTCTGAGGCCAGGCGCAGTGGCTCACACCTGTTATCCCAGCAGTTTGGAAGGCTGAGGCAGGAGGATTGCTTGAGCTCAGGAGTTGGAGACCAGCCAGGGCAACACAGTGAGACACTGTCTCTATTATTAAAAAAAAATTAAAAAATAAAAAATAAAATACAATAGCCATCTGTTGTAGAAATTTCTCAGCTTTTGGAAACTAGTAAATATTTACTTGTCTGAAAAATGGCAGAATTCATAGTTCAAAAATTTTGAGCATTTGTAGCAAAATAAAAGGGATTCTGAACAATATTTTTCCAGTCTGATTGTTGTTTTCTTTTTTTTTCTCCCTTCCACTAG
Seq C2 exon
GTGTCACTCTGCAAACCTGAATGGTGTATACTACAGCGGCCCCTACACGGCTAAAACAGACAATGGGATTGTCTGGTACACCTGGCATGGGTGGTGGTATTCTCTGAAATCTGTGGTTATGAAAATTAGGCCAAATGATTTTATTCCAAATGTAATTTAATTGCTGCTGTTGGGCTTTCGTTTCTGCAATTCAGCTTTGTTTAAAGTGATTTGAAAAATACTCATTCTGAACATATCCATGCGCAATCATGATAACTGTTGTGAGTAGTGCTTTTCATTCTTCTCACTTGCCTTTGTTACTTAATGTGCTTTCAGTACAGCAGATATGCAATATTCACCAAATAAATGTAGACTGTGTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000104760-FGL1:NM_147203:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(27.3=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=PD(19.8=83.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)