HsaINT0064037 @ hg38
Intron Retention
Gene
ENSG00000104760 | FGL1
Description
fibrinogen like 1 [Source:HGNC Symbol;Acc:HGNC:3695]
Coordinates
chr8:17864393-17868735:-
Coord C1 exon
chr8:17868548-17868735
Coord A exon
chr8:17864752-17868547
Coord C2 exon
chr8:17864393-17864751
Length
3796 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGA
5' ss Score
5.11
3' ss Seq
TTTTTTCTCCCTTCCACTAGGTG
3' ss Score
12.62
Exon sequences
Seq C1 exon
AATTTCTACGAGTTGAATATTGGGGAATATTCTGGAACAGCTGGAGATTCCCTTGCGGGGAATTTTCATCCTGAGGTGCAGTGGTGGGCTAGTCACCAAAGAATGAAATTCAGCACGTGGGACAGAGATCATGACAACTATGAAGGGAACTGCGCAGAAGAAGATCAGTCTGGCTGGTGGTTTAACAG
Seq A exon
GTTTGATGTCTTATGAGCATAGTTGTAATGGAGTTGATGATATCTCACTGATAGACATTAATTATCAATATAATATGTATGGTAATGTTAGTCTTTATTTATAATATTAGTATTATTAAGTAATCATTCTCATTAGAATTCTTCAGCAATGAAGTCGTTTTGAGGATTTGTTCATTGTGTACATTAGTAAAGTGTAAATGTCATAGAAATAAATTATTACTTTTACAAAGATCATTTGCAAACTGAATTATGGATGAGTTATAAATAGAAGGCCACAAATTCACACAAAGAAAGAGAGAGCATGTATATATATGGAGACTATTTGGCATCCTAATAACCAACTAGTTCTTCACCTGACCATATCACACAAAAGAGCCACCGTTATTGCTGTAATGCTTCTGTATAGTACTACTTTTCAATCACTATGGCTTTCATTAATTCATTGAGTCTAAGCCTCTCCCAATACAGAAATTTCCTTTACAATAATCCAGAAACCTAATTCTACCCTCTGACTGAATACATTCATGTTACTTTATCAGCAAATTCATTCCGTTTTTGATTGTATATAGTTGCTTCTTTTTTTACTGATACAAAATATTTTATATATTTCTGGGGTACATGGGCTAATTTTTGCATTTTTGGTAGAGATGGGGTTTTGCCATGTTGCCCAGGCAGGTCTCGAACTCCTGGCCTCATGTGATCCACCTACCCCGGCCTCCCAAAGTGTTGGGCGTGAGCCACCGCACCCTGCCGAATTCATAAGTTTTAAATTGCATGTCATTCTGAGCAGAGATTCGCACCATTGGATTCTTTCTGCCCAGGAGGTGGGTCACCCCTCTGTCTAGCGTATCCACGCTGAAAGCCCTCCCTGCCCCAAGACACTTAGTAGAAGTCTGAGTTATCAGATCCAGTGTTGGAGTTTCATAGTGCTCGTGTTCGAATCATGCTTATTTGATTTAATAATGGTCCCAAAGCACAAGAGCTGTAATGCTGACATATTGTTATATAATCATAATCTTTTATTATTAGTTGTTGTTAATCTCTTACTGTGTCTAATTTATAAATTAACTTTGTCATAGGTATGTATATTATAGGAAAAAACAGAGAACTACTATAGATGGTTTTTTTCCTTCCTACACCCAAAAGATTTTTCCCCCTAGCGTTCTGAAATTTTACAGTGACATACACTGTCGTGGTCTTCTTTTGGTTTACTGCAGTGGGTACTCAGTGGTTCTTTTGAATCTATATCATGTCTTTCAGTTTGGTAAATTTTATTTTCTTTATCTGCTCGTTACTCACTTCGTAGCTGTTTCGGTTATCAGACTGAAAAAGCATAGTATCAATATATAGAATTTGGTATTATCTGTAGTTTCAGGCATCCACTAGGGGTCTTAGAACGTATCCCCTGCAGATAAGGGAGTACTACTGCTGTTGTAAAAATAGTCATCTTTTCTATATTTTGCTTTTTTAAAAAAACATTTGAGTCCATTTAAGATTTGATCATTTATAAAGGAACTGGAGTATTTCCAGCAGTGTGAAGGAGAGAAACAAATTTCACTCTCCTGCTTTGCAAATTGAAGGTGATGATGGTGTTTTCCTTAGTGGTTTTCCTGTTATTTTAAAAACCGTCTTCTTCACCTGTTCCTACTCCTTTCTTTCCCCCTTGTTCTTCTAAGTCAGCATGACATAAAACTTAACGTGTAATTCATGAAGTCATCTGCAAGCATCACCAATGTTTGATTTTGAAAACAATTCCATATACAGAAATAATTACTAATAGTATCCTGAGATCAAAACCATGTACTTTATCCAGCTGACTGGCTTCTAAGGCATCTGAATGAAAACTACCATGTATATTAATGTGGGCAAAGGAACGATTTACCTGACTTTAAAGAAATGGGTTCAGGGAGCACAAAGAAAGGCCATTCATTAGGTGGAGCCTGCCACAGAGCCCACATTATCCTTGGAATCAAAGGGGTTGATAAGGCTGTGCAATTGGAAAATCAGTAGGCATTAAGGGAGAGAAAGTAGATTGTTTTAGAAACTTGGTGCTACTTCTACCATGCCTACTATCAGTGAGTTCGACTATCATCTTTTCTTCCTTCTTACTGTTGCTTTTTTTCTGTCCCATAGTTCTTCTAATTTACATGAAATGTTGGCACTTCATAAATATTACCCACCTATAAAATGTTTTTTTCCACATAGCAAACCAATCACTGCGAGTTGATGTCTTTTCTTTGTTAGTGTAGCATTTCACGTGAGTGTTCACAGCCACTTCTTCACCAAGGAAGACCCAATCATCCCCTAACCTAGTTTCAAATCCAGGCTGTTCTAAAAACTAAACGATGCTAGAAAACTGGTCTCAGAATAGTGAAGGTTTCTTATGTTCATCACAGAGTCAGTTTCCTAATGGGATTCAAATGATAGACCAAATATAAAAATATAGTTAGCAGATGTCTCTAGATAGACAAATATATGCCAAAATATATATTCTGGAGACTCAATTTACAGTATTTTCTTTTTTTAACATTACTTTCCATGCTGTTTTAAAAACACAGTAGGCTTTGACATTTGCAGACTTGACATACATATTTTCAATTAATTACGTCCATTTAAGTTAGGAGGACTTCGAGAACGCTCAGTAGGAGTGAATCATTAAGCTGATAAGTGATTCAAGCCAGCCACTCAGCCTTTACGGGTAGATTATATGCTTTTTTGATTCAATAATTTGGGTTTTTCCATAGATGTTCAGAACTACCTCTTGTGAATGTTCTCCTTCTATCCTAATTCTGACATCTTTTCATTAATTTTATCAATAAAGAAGTATATGGCAATTAATTTCATAACAACACACATAAACTTATTGCATACTGTTACATGTAAATTATACATATCAAGGACAAAATTTACAGACTCCAAAGGAGGAAAGAAACATTTTTATATTGTCGATAACCTAACCAGCTTATCTAGATTGGTGCAATATATGTAAAAAATTAACTCAGCAACTAGGAAAAAATGATTATTGGTTGATGGGTGGCAAAACTTTAAATGGTGATTTAGGTTTGTTTGCTTACCCTTGAGATTGAAATAACTGATAGGCTAGCAATTTAAAGAAGGGGACATACGGAGTTTGAATTATGAAAGCTAAGTCTTAGCAGCAGAGGAATGAACGTGTGAGTGCAAATTATCCAGGAAAGCCAGTAGTAGAGCACCTTGCCCACGACTTGCTTTGCTGACACTCACCTTAGCTCTTGTTAAGTATGAAATTAACACTGTTCTGAGTCAGGAGGTTGTAAGGCTGGAGGTTACAAGGATGCGTTTTTGTTTGCTTGTTTTAATTTTTTGTTTAAAGAAAATCAAAAATTGAAATGCTTATTTTTCAATGCACTGTGAGTGGCCTGGGTTGTATTTTCAGATTTGTAATGGCAGTAAAACTCACCATTTTAAAATACCCATCTCTGAGGCCAGGCGCAGTGGCTCACACCTGTTATCCCAGCAGTTTGGAAGGCTGAGGCAGGAGGATTGCTTGAGCTCAGGAGTTGGAGACCAGCCAGGGCAACACAGTGAGACACTGTCTCTATTATTAAAAAAAAATTAAAAAATAAAAAATAAAATACAATAGCCATCTGTTGTAGAAATTTCTCAGCTTTTGGAAACTAGTAAATATTTACTTGTCTGAAAAATGGCAGAATTCATAGTTCAAAAATTTTGAGCATTTGTAGCAAAATAAAAGGGATTCTGAACAATATTTTTCCAGTCTGATTGTTGTTTTCTTTTTTTTTCTCCCTTCCACTAG
Seq C2 exon
GTGTCACTCTGCAAACCTGAATGGTGTATACTACAGCGGCCCCTACACGGCTAAAACAGACAATGGGATTGTCTGGTACACCTGGCATGGGTGGTGGTATTCTCTGAAATCTGTGGTTATGAAAATTAGGCCAAATGATTTTATTCCAAATGTAATTTAATTGCTGCTGTTGGGCTTTCGTTTCTGCAATTCAGCTTTGTTTAAAGTGATTTGAAAAATACTCATTCTGAACATATCCATGCGCAATCATGATAACTGTTGTGAGTAGTGCTTTTCATTCTTCTCACTTGCCTTTGTTACTTAATGTGCTTTCAGTACAGCAGATATGCAATATTCACCAAATAAATGTAGACTGTGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000104760:ENST00000381840:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(27.3=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=PD(19.8=83.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development