MmuINT0064364 @ mm10
Intron Retention
Gene
ENSMUSG00000031594 | Fgl1
Description
fibrinogen-like protein 1 [Source:MGI Symbol;Acc:MGI:102795]
Coordinates
chr8:41191434-41197145:-
Coord C1 exon
chr8:41196958-41197145
Coord A exon
chr8:41191681-41196957
Coord C2 exon
chr8:41191434-41191680
Length
5277 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGA
5' ss Score
5.59
3' ss Seq
TTCTTCTGTTCTCCCACTAGGTG
3' ss Score
12.91
Exon sequences
Seq C1 exon
TCTTTTTATGAACTAAATATTGGAGAATATTCTGGCACAGCTGGAGATTCCCTGTCAGGAACTTTTCATCCTGAAGTACAGTGGTGGGCTAGTCACCAAAGGATGAAGTTCAGCACGTGGGACAGAGATAACGACAATTACCAAGGAAACTGTGCTGAGGAAGAGCAGTCTGGCTGGTGGTTTAACAG
Seq A exon
GTTGGACACTTTGCGGACCCAGTTGTAATGGCACTAATGATACCTCACTGACGGGCCTTAGCTATAATGAGTGATGTAATGTCGACCTCTGTGATACTGTTAAGTAATCCTCCTTTCTAGAACTCTTCAGCTTTTGAAGGTGCTTCTGAGGACTTGCTCATTGAGTTATGTTAGTGAAGCCTGACCAGTACGGCAGAAAAGCTGGGTGTGTCTGGCGTTTCTGTAACTCCAGCACTTGGAGGCAGAGACAGGAGCATCACCCCAAACTCAACACCTGTCTGGTTCACATACCAAATTCAAGGCTAGCCTGAGCCACTTAGCAAGATCCTGTCTTGAAAACAAACAGACAAACAAACAAACAAACAATTACATGAAAGAAAAAGAAACAAACAACAAACCAAATTCTCCAATAACATGTCATGGAAATAAATCAAACTTTTACTTTTTAAAAAATTATTTATTTATTTTATGTATGTGAGTACACTGTTGCTGTCTTTAGACACACCAGAAGAGAGCATCAGATCTCATTTCAGATGGTTGTGAGACACCATGTGGTTGCTGGGATTTGAACTCAGGACCTCTGGAACAGCAGTCAATGCTCTTAACCCCTGAGTCATCTCTCTAGCCTTCTACTTCTTTTTAAATTTATTTTTATTTTATGTACATTGGTGTTTGGACTGCACATATATCCGTGTTAGGTTGTCAGAAGCTCTGGAACTAGTTACAGACAGGTGTGAGCTGCCATGTGGGTGCTGGGAATTGAACCTGAGTCTTTGGGAGAGAGCAGCCAGTGCTCTTAACTGCTGAGACATCTCTCCAGCCCTCAGAATGCTACTTTTACGAGGATGTTTTTGTTATAAGCAGAACACCACTAGTTGACGGGAGGAAGTAGAGAGCATGCATACAGTAAAGTTAAAAAAATATTATAATAAAGTTAAATGTTAAAGAGAAAGAAAGAGAAAAGGAAAAAGGGAGGAAGGAATTTGTGACACTCAGCTAGCTCTTTTCACTGCCCTATATCTTACAAGATAACCACTGTTACTGCTGTAATTTTAATGCTCCTTTTATTCCATATTAACTTTTTTAAAAATGTATTTATTTTTATTTTATGTATTTGAGTACACTGAAGCTGTACAAATGGTTGTGAGCCTTCATGTGGTTGTTGGGAATTGAATTTTTAGGACCCCTGATCGCTCCAGTCAACTCCACTCTCTCAGTCCCTGATTGTTCCAGCCCAAAGATTTATTAATTAATATACATAAGTAACACTGTAGCTGTCTTCAGATGTACCAGAAAAAGGTGTCAGATCTCATTACTGGTGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTTAAGACCTTCGAAAGAGCAGGCAGTGCTCTTAACCACTGAGCCATCTTGCCAGCTCCCATATTAACTTTTATTAGTTCATTGAATATAAGCCTTTCCAATCTAGGGAAGATTGCTACAATAGTCTTGAAACTTAATCCTACCCCAGCTGCTGTTTATCATCGAGCTCATTCTTTTGAGTGTGGAGAAGCTGGGGGACTGGGTTCTGAGGCTCAAATCCTGAGCCTTGTGGATCATAGGCAAGCACTCTACTATGGAGTACACACACCCTGGCTTCTGATACAAATTTCTTCATTGTATGAACCTGAGATATGCTTCTTTTTTTATTATTATTCTCTGTCCTGTCCCCACCTCCCAGCTTTTGAGACAGAAACTCATGTAGCCCAGGTTGGCAGAATTATAGGCAGAAGCATCCATGCCTGGCTGACTTTAGAGTGGTATATTCAATTCAGATTCAGTGAGTTTAAGATATTACCATCAGTTACAGTAAATTTATACAAGTGTAAAAATAGCAGATTTAGCCGGGCGTGGTGGAATCCTTTAATTCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACATCCAGGGCTATACAGAGAAACCATGTCTCGAAAACAAACAAACAAACAAAAATAGCAGATTTCCCCCTGGGTTTTACTTTTCCAAAAGATGAGTCTATTTAACATTTGGCCAGTTATTAGGAAAACAGAGTGCACACACACACACACACACACACACACACACACACACACACACAATGTGAAAGGAAGAGAAGGAAAATCACTTTTTCCTACTGTGAAAACTTGAAACAAAGTGATAATCTTCCCTTGTGGCTTTCTTGTTCTTAAAAAAAAAAGTTCTAAGTAAGCATTATTTAAGACTTACCTACAGATAACAATGTCATCTGTGAACATTCACTAATGTCTGCTTTTGAATAGACTGGAAGACATAACCGTTAACATTACTGAGTTCTGACGTGTGTACTTTGTCCATTTGGTTGATTTTTGGTTGATTGTTCTGTGCCCGAATGGCAGTTGTACACACATTAAGGAAGGCAAATAAATGTTAAGAGCTGACTTTAGAAATAGGGGTTGAGGAGAACAAAACAATTCAGTAGCAGGAGGCACCCACGGACTACTGGTCAACCTAGAGAGAAAATAAATTATTCCAGAAGCCTCGTCTGTACTCTGGTCTTCTGTGTCACATCTAATCTACGTGACTTGTTGGCACTTGTGAGTGTCTCTCGCTACTGAGGCTGGAATTGCAGCGCCCCCCACAGGTTTGTGTATGTATAGTCCAGCCCCACAATAGGTAGGAGCCTAGTCACAGCTGCCCTCCCTGCCTGTGCCCTGTGCCTTTTCCACCGGGAAAGGCTCCAACCCCTGAATCATTTGCCAACATAAGTCCTTCCTCCCGTAAGTTGTTTTTGTATGGCATTTAGTCATAACCAGTAGAAAAATAACGAAAACACTCATTGCTGCCTTGTGGGCCTCCTGTTTAATGCAAGTGTGATTTCCCCTACCTGCTATGCCCCACACCTGCAAGCTACAAGCTGCTTCGTTACCTCCGAGTATCAGTCTCCACTAAGCAGTGTCAAGCCCAGGCTAGAAACTGAAGGCTACTGACACACCCATCCCTGAATGCTAAGTCGTGGGCCTTATGGTCCATTTCTCAATAGGCTCCAAATCAGTCCAAATATGAAAGTTCATATGGCAGACGTCCTCTATATAAAGATATGCCCAAGTATTTATTTATAAAGAGGTTTTTCTTTTTAAATGTTACTTCTCATGGTACTTTGAAAACACAATGAATACTGAAGCCTTGCAGATTTAGGACGCATGGCTCCAATTAGTCCTAACCATTCAAATTAGGATGGCTGCCAGGGTGACCAATAAAAGTAAATCAGAAGCTTAGTGATGGCCCACGCCTACTACTTTGCATTTATGAATGAATTATAGGCTTTTCTGACTCAATATTTTTTCCAGAGTTGTTTTTTTTCCCCCAGAACTGCTTCTGAATATTCTTTTCACAGCCTTCAGGCTGATATGTTTTCATTCATTATAGCAATAAATAAATATACAGTGGCTGGGAGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCCAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAAAAACCCTGTCTTGAAAAACCAAAAAACAAAACAAAACAAAACCAAAAAACCAGTGATTAATATTATATCAGGAAAATTAGAACAAACTGTAACATAGAAGTTTTTGTATGCCAAGGACAGATGAGTGTACTCCAAAGGAGGAAGAAGGAAATATTTGAGTTTTATGATACTCTAACAAACCTATCTAGATTGGTGCCATATATGTAAAAAAATTAACTTGGCAACCCAGACAATAGATTATTTGATGATAGCTGGGGGAGTTTTAAAAGGAGGTTTGGGTCCTGTTTGCTCTTGAAGATGGAAATATTTGATATGGTAACAGTTCAAAGAAGCGATCTGACTAGTGAAAGCCACATCTGACCAGGCCAGCTCAGTCACCTCAACAGGGTGGAGGTGGAAAGATGGGAAAGAAAAAGACAATTAGACAACAGTATAACATGAATGACGACTCCAGCAGGTGCTGAAGCTAAAGCAGGTTTGTTTTTTCCAGTCTGCTTTTATAACAATCTAGGTACATACAAAGAGTAAGCTCAGTCCTGAGGCATAAACAAAGTAATCGATTAACAAGGCAACAATCAAAGTAATCAAACAAGGCAATAAACAAAGTCCTGTGGTCCCTGCATCTAGGGGTTTATCACAATGACCAAAATACAAGGAATGCAATACTTTCCTCAGCTGTATTGACCTGGAGCCTACTTCCTAGTCCTAGCCCAATGTCAAATTCCTGCCGAATTCCTAGAAACAGCCCCCAATGCTCTCCTCACACATCTTGGCTGTAGATTAGAGAACTTGGATGCACCAACTACCCAGGAAGCTGCAGCAGAGCCCCTCCCCCCAGTCTTATTTTGCTAATCATGGCTTCCTGGCCAACCACAAGGTAAATAAACACTGCTCAACTGGGAGGATGTAGGTGAAGTTTACAAAGAAGTTTTTCTTTGCTTTTTTTTTTTTTCCTTCTCCTTTTTGTTTAAAAGCTACTAAGAACTGAAATACTAAGCTAAGCAGTGGTGTCACAGGCCTTTAATCCCAGAGCTTGGGAGACAGAGGCAGGAGGATCTCTGTGTTTGAGGCCAACCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACTGCCGCTTCAAAAAAAGAAAAATAGGAGCTGGTGAGATGGTTAAGATCGACGACTGCTCTTCCAAAGGTCCTGAGTTCAAATCCCAGCAATCACATGGTGGCTCACAACCATCCATAATGAAATCTGATGCTCTCTTCTGGAGTGTATGAAGACAGCTACAGTGAACTTACATATAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATATTTTTTAAGAAAAAAAAACACTCAATAAAAAAAAAAGAAAAATGAAAAAGAAAGGAGAGGGCGGGGGAGGTAGAGGGAAAACTGAAAGAACTGAGTTATTTAATTCTCAACACTCCAAGTGATTTGGGATGGATCGTCACATATACTATGGGACCGAAACTCACCTGTTTAAATAACATTTGGTTGTAGAAAAGTCTCAGGTTTGAGAACATGAAAGTTTTGTGGGAAAATGGCAGAAGTCATTATCTAAAAGTTCTAATCATTTCTTAGCAAGTTTCTCAAGAGTACTTTCCTTCTGATTGCTCTGTTTTCTTCTGTTCTCCCACTAG
Seq C2 exon
GTGTCACTCTGCAAACCTGAACGGTGTTTACTACCGTGGTTCCTACAGGGCAGAAACGGATAATGGTGTTGTGTGGTACACCTGGCATGGGTGGTGGTATTCCTTGAAATCTGTGGTTATGAAAATTAGGCCAAGTGATTTTATTCCAAATATTATTTAGTTGCCCTCATTGGGATCTCCTTTCTGTAATTCATCTTGGTTTACTTGAAAATAAATATTTGAAAAAGATATAATTCTGAATAACACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031594:ENSMUST00000034003:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(27.3=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=PD(19.8=83.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types