DreINT0011437 @ danRer10
Intron Retention
Gene
ENSDARG00000101858 | FQ311894.1
Description
NA
Coordinates
chr13:1579293-1583466:+
Coord C1 exon
chr13:1579293-1579483
Coord A exon
chr13:1579484-1583355
Coord C2 exon
chr13:1583356-1583466
Length
3872 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGA
5' ss Score
9.11
3' ss Seq
TCCACAACTGTTTCTCACAGACT
3' ss Score
6.72
Exon sequences
Seq C1 exon
CTAAAGGCAGGACAAACGTGGAGCTGCGGGAGAAGTTCATTCTCCCAGAAGGCACCACGCAGGTGATGGCAAGCTTCCGGTACAGAGGTCGAAGGTCACGGCCGTCCTCACGAGGAGCCTCCCCTAACAGATCCAACTCCAGTCATAGCTGCGCTGCACAGAACAACCCGCTCGCACCAAACACACCCAAG
Seq A exon
GTATGATCAGCACCCATTCAGGAGAAGTGGAAAACCCCATGTTTGGGTCACATTTCTCACATAGAAATCTGATATATGCTAATATATGCTATTTATTTCTGAAGATTTGTGTTGGATGGTTTTGGGAGCATCGTAACTAAAGACTTAATCTATTAAATAAGAAATATTACCTTTTATTGAATGTTTACAATGCAAATCCAATTGGTATGAAACAAGTCTCTCATATAATAATAGATCTACTGAAATACAGAAAATATTACTGTACACAGCGTATTGTAAATAAATCATATGAACATGTTCACATTAGTTAATAATATTACTAAAATTAATTTATATAAAATAAAATATATATATGTGTGTGTGAATATATTAATTATCTGACTTTATAGGTGAAATAGATAATGGATATATATATATATATATATATATATATAATATATATATATATATATATATATATATACATACATAAATATATACACACACACACACACACACACATATATATATATATATATATATATATATAATCTATTTCAGCTATAATGTCAGATAATTAATATATTCACATTCATATTTTTTCCAACCATTATATAAATTATTACATTTATTATTACAAATATGTACAGGCTTATGTGTCACGGTTTGGTGGGTGGGGAAAATGAGCGAGGACTCAAATGCAGACAAATTAAGGGTTTAATATAAAATACAAATAAAACAAAAAGGCAAAACAAACTACCCTGAGGAGGAAAACATTAATGAAACAAATAAACAAACAAACTAGACTGGGCAGGCTGGCTGGGATCAGGACTGGAGAACAGGACAAGGCAGGAAACGATTAAATACGACGACGAACTGGCACAGGACAGCAGACATGAGGGGAATATAAGCAGAACACACAAGCAGATGAACATAATGAACTAATACTGGGTTAACGAGGAGGGGGGGACTAGACAGTAGACAGGAGAGCACATGACACAGATACAACACAAGCCATGCGCTCACATAAAACGGGACAAGAACCACTCGTTCACAATATAAGGACAAGGCTGAAGCATGCGGCCACAATGCAAACACAGAGCCACGGGCTTGAACAACACAAACACAAATAGACACGAGCACACGATATATGAAAACACCTTACCGTGTGCTCACACATATGCATCGCACATGTTTCATCTCAGAGCCAACCGAAACCAACTAGACGGAGACGCTGAGAATGAAACCGACAGAACAAAACATGAGTACAAGAGCCCACGTGCCCACATCAATACAGAGACGCACAATGACAGAAACAGGACAAGACTGAGCTAGTGTCCGGACCAGGGTGGCAGAAACCTGACACTTAAGTATATTAGCTATACTTTTTCATATATTTTATTTTATTTATAATATATGTATATATATATATATGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTCATGTTTATTTGTAGTGCACTTTTTATTATAATTATTGTTTTAAAGCAGCATCTTTAAATATATTTGCTATAATTTTATATTCGTCTTCATATATTACTTTATTTTATCCAATACATTTGAACAAATATTTGTAATTCCAATGGTTTGGGAAAAAAATAAAAGCAACCATTTTTTTATCTGCATTATTTCGAAATATACGTTGCATTACGACACGTTTCAAATGAGAAATCCAGATATGAACTTGCATGTCATATATGTAATTTGCATATATTTCCATGCATCAGATTTCTACATGGCTGTCCTGCCACCAGTCATTTAGCTCGTTTCCAAATCCTTGTGCGCTTCCCTGCTGCAGCTGTTTAGCAAGGTGAAATCAACCCTTCGTGGTTTGGAACGCACTACAAAGACAACAACTCAAGTTACCATTCATTTCAGCTGAGTTTCACTCGAAGTGGAACATGCAGTATGGCGGAAAAATAAGCACTGCTTTCTAAATTAAAAGTCCTGACCGGTAAAGTCATCAGATGACTGAAGCTCCTGTGCTTAGATACATGCGCAGGAGTGCACGTGTGGATTAGAAAATACACAAACCACAAATACATACTTTTACAATACAAAACATAAGAAACAGCATTTATAAGACAATTGATGTCAGATTCAGAAGCATCCAATGTGAGCAGCTTTTAAGAGATCTGCTTTTTCAGCCTGAAAAAGAGTTGCGGGAACACATGCTATAAAACCCACATTATTAAAAACATTTTCACCTGATGTGATGCATATAAATTGTTGTTGTTGGCATAAATTAAGTTATTTACCTTCTTGATTTTTATTATTTTAATTTTTTTTTGTGGTGGGCAAAAATTAAATCGCATCCAAAAATAATGTTTTGACCAGCCTGATCTCACAGTGCAAGTATTTTACGTTTTGTCAGTTTAGTGGCTAATTCGTACGAATTCATACGAAAATGTACGATTTTAAAAAGGAGGCGTGGCACCCATCCCCACCCCTAACCCCAACCGTCATTGGGTGATGAGCAAATCGTACTAAATTGTGCGTATTAGATCGTATGAATTCATACGAATTAGCCACTAAATGAAAAAGTTACGAATTGCCGTGAGATTGTGTTGGTTTTGACATACAATAATATAAAAGTATGTACTGTAAAAATTAAAAAAACACATATGCATGCTTATATTTTAGAAAATATAATAATATTAATATAATATGATGCAAATTATTTTTAAAAGTAATATCTATGTAACATAATTGCTTCGTATAGTTTTGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGTACACACACACACACGGCAAAATAAACTTTTAATTTTGGATGCCATTAATCCCTGCCCAGCACATGGTATTTATACCAAATGTAATGAAATTAGTTTTTCGGTTATGAAGATTCTGTTAAACATCACACATAAAAAATATAAAAATGTATTATTATTTGCGTTATAGATTTAGGCTAAAATATATTTTTACTGCAAAAAAAAATTTATTGTCTTGATTTTAGTCCAAATATCTAAACACTCTCAAATCAAGAAGCATTTTCTAGACAAGCACAAAATATTGTCTTATTTTGAGAAATAATCTGCCAAAATTAAGTGAGTTTTTCCCTAAAATGAGCAAAATAATCTGCCTATGGGGAAGAAAAAAAAAAAGAAATAATTATTTTACCCCAGTGGGAGATTATTGAGCTTATTTTGAGAAAAACTCTGGAAACAAGACTTTTACTTTATTTTTTAGATATTTTAATACATTAACTAATTTTTAATCTGATCTAAAAACAAGACAAAAAGTCATTTTTTTGCAGTGTAGATTAACCTTATTCTTTAGGTCGAGCCGGTGCAGCCTGCAGACTTCGTCTCATTCACTTCCATTGATTTTTAGATATTAAAAGCAGCTTGTTATGTTGGTTAATGTTGCAAACTACAAATCTAAACAAAACAAATCTACTTTTCATGTAAAGTCATGAACACGTTCGTATGAAGAGCAAGCAGTTGACTGTTTTCTTCTGTATATTATTTCTCGTCATTTCTCCCATTGGCAACTGAATCAGACGTTTTAAAACAATCGCACTTCCGCATCGCAGAATAAAGTCACTAAAGCAGAATAAACACATTCAGTCAAGAGTCCATCTGTGTCATCTTACAGTGTCGCCTAAACAGGGAGTTCACAAGGATTTCAAGCATTTTCACTGACTGTCCCATCAATATGTGTCGATATGTAACCGTGTTCCTGTATCATCTTTTGTTTTTCCTCTTCTGTTGCCACCCTTCGTATGTGGGTTTATCCACAACTGTTTCTCACAG
Seq C2 exon
ACTCCCCAACATTTAACCCGCAATTATGATAAACCCTGGCTGACAAACAGCAAATCAGCCACCCCTCTTAAATCATCCGACTCCTTTGACAGCCAAGGGTCGTCCAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101858:ENSDART00000165987:57
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.781 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]