DreINT0012053 @ danRer10
Intron Retention
Gene
ENSDARG00000101928 | GORASP1 (2 of 2)
Description
golgi reassembly stacking protein 1, 65kDa [Source:HGNC Symbol;Acc:HGNC:16769]
Coordinates
chr24:41165830-41167905:+
Coord C1 exon
chr24:41165830-41165960
Coord A exon
chr24:41165961-41167793
Coord C2 exon
chr24:41167794-41167905
Length
1833 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGA
5' ss Score
10.03
3' ss Seq
GCATGTGTGTGTTTGTTCAGTCT
3' ss Score
5.82
Exon sequences
Seq C1 exon
TCGGAGGACTTTTTCTCGCTGATCGAGGCGTGTGAAGGTAAATCGCTGAAGCTTCTGGTCTACAACACACACACTGACCGCTGTCGAGAAGTGCTCATCACTCCCAATGCAGCCTGGGGTGGAAACGGCAG
Seq A exon
GTACGACATCCGCAAACACACTGTTTCAATTCAAACATGCGCATTAAACTTATGCAAAAACCTGGAATATTGCAGAAAAGATTTGGGAATAAAGCGGCATTTCCAACAAACACAAACAGTGTTGCAAAAGAACATTGTAGATGTTTTACAATGTGCCGGAAACGCTGCAAAGTCCATTAATACAAAGTTCCTAAAACACAAGTACAGTTGAAAGCAGAGGTTATCATACTCTGTATTAAAAGGCACATAACCATTTTAAGAAAGGTCAGATGTTAATGTGACTAAATTGTTTTTATTTTAGGTAAGTTAGAGTGATCACATGTGTTTCTGTTCTGCTAATTAGCAGAATAATGAGAGAGAGATTTATTGAGAAATTGTTATAACTCTTGTTGAAAGTCAAGTTTACACACAGTAAGATTATTCTGCCTCTGGAAAAGCTCAGATGATGATGTCAGGGTTTTGGAAGTTTCTGATTGGCTAATTGGCAACATTTGAGTTAATGTGAGGCACAACTGTAGAATAGTATTTAGGGAAAAGCTCAAACACACTGCCTCCTTGTGTGACAACATGGGAGAATTAACAAGCCAGAATCAATAACAAAGCCAGATTACAATGTGCTCAATCACACTGGGAAAAAGACTCATGTTTGGAGACATGTGCTGTGCTCTGATGGAGCTAAGATTGACCTGTTTGACCATAATGAGCAGTGTTAAATTTTGAGGACAAAGGGGAAAGCGCACAAGCCTAGGAACATCATCCCAACTGTGCAGTATGGGGGCGGCAGCATCATGTTGTGGGGCTGTTTTGCTGCAGGAGGGACTGGTCCACTTCACAGCATAGATGGCATCATGAAGAAAGAACATTATGTAGAAATACTGGAGCAACATCTCAAGACATCAGCCAGGACATTACAACTGGGCCACAAATGAGTCTTCCAAACAGACCATGACCCTAAGCATACTGCCAAATTAGTGAAAATGTGCTTTAAGGACAACAGAGTGAATGTTTTGGAGTGGCCATCACAAAGCCCTGATGTCAATCCTATAGAAAATGTGTGGGCAGAGTTGAAAAAGCTTGTGTGAGCAAGACAGCCAACAAATCTGACTCAGTTACAGCAATTCTGTCAGGAGGAATGGGCCAAAATTCCTGCAAACTATTGTGAGAAGCTTGTGGAAGGAGACCCAAAACATTTGACCAAAGTTATACAGTTTAAAAGCAAAGCTAAAAATACCAAGGAAATGAGTGTAAATTTGACTATCTAGAAACTAATCAAAATTTCTCCAAAAAAATAGATAAATAAATAAAATCTCTCATTATTCTGGCATTTAGCAAGAAAAAATGTAATCCTTATGGCCCTAAAATAGTAAACGTTTAGTATGATTTACCATCAGACAGTTTTTCAAAAAAAATTTTTTTTGGAGTGTATGTAAACTTCTGCTTTCAACTGTTTATCTGATCATCATCTGTGAAAAACTCAATCATATCCTGCATACTGATGCATTTTTTCTGATCAGATAAAAAGTTTCTCCTACTCAGTTTTCTTTGTGTGCATTTTCTAGATGCATGCACATCTTGGGATTTCCATTGTTATGCAATATTCCAAAATGTGTAAATACATATATACAGTAGGTGGATGGAATCAGTGATCATTAAAATACACCCTAAAATAAAGTGTGAACAAAGAAATCTATTTTTTCCCTGTACCTACTCAACCAAACTTGAATCAAAAGATAACTTACAAACAAGATGTGTGATGGAACTGTGAAATTTACTATATATATATATATATATTTTTTTACTTTCATCCACTTGTGCATGTGTGTGTTTGTTCAG
Seq C2 exon
TCTTGGCTGTGACGTCGGGTTTGGATACCTGCATCGCATCCCCATGTGTCCCGTCACATCTGAACAACACCAAAACACACCTGAACACCAGGAAAACAAGCACCGCTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101928:ENSDART00000161351:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.500
Domain overlap (PFAM):
C1:
PF044959=GRASP55_65=FE(32.1=100)
A:
NA
C2:
PF044959=GRASP55_65=PD(11.7=42.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGGACTTTTTCTCGCTGA
R:
TCAGAGCGGTGCTTGTTTTCC
Band lengths:
241-2074
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]