MmuINT0072354 @ mm9
Intron Retention
Gene
ENSMUSG00000032513 | Gorasp1
Description
golgi reassembly stacking protein 1 [Source:MGI Symbol;Acc:MGI:1921748]
Coordinates
chr9:119838669-119839221:-
Coord C1 exon
chr9:119839091-119839221
Coord A exon
chr9:119838880-119839090
Coord C2 exon
chr9:119838669-119838879
Length
211 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTT
5' ss Score
8.17
3' ss Seq
ACACATCTGGCTTTCCACAGTCT
3' ss Score
7.72
Exon sequences
Seq C1 exon
TCAGAAGACTTCTTTACTCTCATTGAGTCCCATGAGGGGAAGCCTCTGAAGCTGATGGTGTATAACTCGGAGTCCGACTCCTGCCGGGAGGTGACTGTGACTCCCAATGCAGCCTGGGGTGGAGAGGGCAG
Seq A exon
GTACTTCCTGGGGTCAGAGGGCTACAGGGCGAGGTGGGTGGGCTGTCCTAGTGGGCATGGGCTCCTGGCATCCCTTGGAGGAAACAGCCCGGACCGCTCATCCTTGCCCAGGATCCTTGCTCAGTCACTGTTGCTGGTTGGGGGAGGGTTATATAGGTAGGGAGGGCTGAAGTGTGGGCTACCCTGATGGAACACATCTGGCTTTCCACAG
Seq C2 exon
TCTGGGGTGTGGTATTGGTTATGGGTACCTGCATCGGATCCCAACGCAACCCTCCAGCCAGCACAAGAAGCCACCCGGTGCCACACCACCTGGCACTCCAGCTACGACCTCACAACTTACTGCCTTTCCTCTTGGTGCCCCACCACCTTGGCCTATCCCTCAGGACTCTTCTGGCCCAGAGTTGGGTTCCAGGCAGAGTGACTTCATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032513-Gorasp1:NM_028976:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.114 A=NA C2=0.803
Domain overlap (PFAM):
C1:
PF044959=GRASP55_65=FE(31.4=100)
A:
NA
C2:
PF044959=GRASP55_65=PD(11.7=22.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGCCTCTGAAGCTGATGG
R:
CCATGAAGTCACTCTGCCTGG
Band lengths:
303-514
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: