BtaINT0067983 @ bosTau6
Intron Retention
Gene
ENSBTAG00000047135 | GORASP1
Description
Bos taurus golgi reassembly stacking protein 1, 65kDa (GORASP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001046518]
Coordinates
chr22:12473370-12473917:-
Coord C1 exon
chr22:12473787-12473917
Coord A exon
chr22:12473563-12473786
Coord C2 exon
chr22:12473370-12473562
Length
224 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTT
5' ss Score
8.17
3' ss Seq
GTGTTTCTGGCCTTTGGCAGCCT
3' ss Score
6.65
Exon sequences
Seq C1 exon
TCCGAGGACTTCTTCTCGCTCATCGAGTCCCACGAGGGGAAGGCCTTGAAGCTGATGGTTTACAATTCTGAGTCTGACTCCTGCCGGGAGGTGACTGTCACCCCCAATGCAGCCTGGGGTGGAGAGGGCAG
Seq A exon
GTACTTCCTGGGATTGGAGGGCTGCGGGGTGGGGCTCTAGGGGGCGCCTGGCCGGTGGGTGTGGACCTTGAGTCCCACGGTGGGGGTGGAGGGCTGGGCCCTGGGCCCAGGGGTCCTGAGGCTGATGTTGGTCTAGGAGACCCTCTCATTGCTGGTGGGTGGGGGTGGCAGGGGTAGGAAGGGCTGTGGGACAAGCCCAGGAGGGTGTTTCTGGCCTTTGGCAG
Seq C2 exon
CCTGGGCTGTGGTATTGGTTACGGGTATCTGCACCGGATCCCAACCCAGCCCCCCAGCCACCACAAGAAGCCGCCTGGTGGCCCGCCGCCCAGTGCCCCACCGCCTGGTGCTCCACCGCCTGGACCCGGCTCCCAGGACTCTCCTGCCCCTTTTGGCCTGGAGACAGGCTCCAAACAGGGTGAATATGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047135:ENSBTAT00000065507:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.136 A=NA C2=0.800
Domain overlap (PFAM):
C1:
PF044959=GRASP55_65=FE(31.4=100)
A:
NA
C2:
PF044959=GRASP55_65=PD(11.7=24.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGAGGACTTCTTCTCGCTC
R:
CTGTCTCCAGGCCAAAAGGG
Band lengths:
298-522
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]