GgaINT0091019 @ galGal3
Intron Retention
Gene
ENSGALG00000006033 | GORASP1
Description
NA
Coordinates
chr2:5193790-5194606:+
Coord C1 exon
chr2:5193790-5193920
Coord A exon
chr2:5193921-5194464
Coord C2 exon
chr2:5194465-5194606
Length
544 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
GTTTTACTTCTGTTGTGCAGTTT
3' ss Score
5.93
Exon sequences
Seq C1 exon
TCAGAAGATTTCTTCTCGCTGATTGAGTCCCATGAGGGAAAGCCGCTGAAGCTGATGGTTTATAACACTGAAGCAGACTCCATTCGAGAGGTAGTTGTGACTCCCAATGGAGCTTGGGGTGGAGAAGGAAG
Seq A exon
GTACTGATCTGCGGACAGCCACTGGGTGATGACGGGTTATGCACTCACTGTAAATGAGCTCTTGTTAAGAATATTGTCATTGATTACAGCTCGTTGTTTGCACTTTAAGGCTTATTTCCTTCTCACATGTTCATCATTAAAGAAAAGAAATAGCTGAGAAGTATTAGGCATGTTCTGGATCTAATCCTATTTGAGTTGACACTGATGGTAAAACTTCTGCTGACTTTCTTGCTAGCAGATGTGTGAAAGTGTAGCTAGCATTTGAGCATTTGGTGAAGCAAGAACGAAATGCAAATCAGGTCAGATCATGTATTTCATGAACATGTAGAAAATAGTTAACCAAAAGCTGAGCTACATCTCCCTAAATATCATTTGCAGAGTATTCCTTGTGCTCTGTCAGTAGCAGAAAGGATTCTTGCAGGTAGCTATTTTCCTGCTCCGGTTTAAGGACTCGCACTCTTTTTGTTTTAGAAGTCAGAATTTAAAAGGCTTCCCAGCTTTGTTAAGGATTTTTTCCAAGTCTTGTTTTACTTCTGTTGTGCAG
Seq C2 exon
TTTGGGATGTGGTATTGGATATGGCTATTTGCACAGGATTCCAACGCAGTCAGTAGTATCAAAGAAAAAGCCAGAAAGCAAACCACCTTCGCCCTTACCAGAAGCTGGAACTCCTGTACCATCTACTAATGGTTACACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006033:ENSGALT00000009713:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.068 A=NA C2=0.625
Domain overlap (PFAM):
C1:
PF044959=GRASP55_65=FE(31.4=100)
A:
NA
C2:
PF044959=GRASP55_65=PD(11.7=33.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATTTCTTCTCGCTGATTGAGTCC
R:
TAGTAGATGGTACAGGAGTTCCAG
Band lengths:
254-798
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]