RnoINT0066445 @ rn6
Intron Retention
Gene
ENSRNOG00000018047 | Gorasp1
Description
golgi reassembly stacking protein 1 [Source:RGD Symbol;Acc:621122]
Coordinates
chr8:128613060-128613613:-
Coord C1 exon
chr8:128613483-128613613
Coord A exon
chr8:128613271-128613482
Coord C2 exon
chr8:128613060-128613270
Length
212 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTT
5' ss Score
8.17
3' ss Seq
ACACATCTGGTCTTCCACAGTCT
3' ss Score
7.95
Exon sequences
Seq C1 exon
TCGGAAGACTTCTTCACTCTCATTGAGTCCCATGAGGGAAAGCCCCTGAAGCTGATGGTTTATAACTCTGAATCCGACTCCTGCCGGGAGGTGACTGTGACCCCCAATGCAGCCTGGGGTGGAGAGGGCAG
Seq A exon
GTACTTCCTGGGGTCAGAGGGATACAGGGCTAGGTGTGTGGGCGGACCCAGTGGACATGGGCTTCTGGCATCTCTTGGAGGAAACAGCCTGGACCCCAGAACCCCGAGGTTCATTCTTACACAGTCACTGTTGCCAGTTGTGGTTGGGGCGGTATAGGTGGGGAGGGCTGAGGTGTGGACCGCCCTGACTGAACACATCTGGTCTTCCACAG
Seq C2 exon
TCTGGGGTGTGGTATTGGTTACGGGTACCTGCACCGGATCCCAACGCAGCCCTCCAGCCAGTACAAGAAGCCACCCAGTGCCTCATCACCTGGCACTCCAGCTAAGACCCCACAACCTAATGCCTTTCCTCTTGGTGCCCCACCACCTTGGCCCATCCCTCAGGACTCTTCTGGCCCAGAGCTGGGTTCCAGGCAGAGTGACTACATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018047:ENSRNOT00000024408:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.114 A=NA C2=0.775
Domain overlap (PFAM):
C1:
PF044959=GRASP55_65=FE(31.4=100)
A:
NA
C2:
PF044959=GRASP55_65=PD(11.7=22.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGCCCCTGAAGCTGATGG
R:
TAGTCACTCTGCCTGGAACCC
Band lengths:
298-510
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]