HsaINT0070791 @ hg19
Intron Retention
Gene
ENSG00000114745 | GORASP1
Description
golgi reassembly stacking protein 1, 65kDa [Source:HGNC Symbol;Acc:16769]
Coordinates
chr3:39141796-39142368:-
Coord C1 exon
chr3:39142238-39142368
Coord A exon
chr3:39141995-39142237
Coord C2 exon
chr3:39141796-39141994
Length
243 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTT
5' ss Score
8.17
3' ss Seq
ATGTTTCTGGCCTTCGGCAGTCT
3' ss Score
5.86
Exon sequences
Seq C1 exon
TCCGAGGACTTCTTTACGCTCATCGAGTCTCATGAGGGGAAGCCCTTGAAGCTGATGGTGTATAACTCCAAGTCAGACTCCTGCCGGGAGGTGACTGTAACTCCCAACGCAGCCTGGGGTGGAGAGGGCAG
Seq A exon
GTACTTCGTGGGGTTGGAGGGCTGCAGGGCCAGGTGGGTGGGGCCTGACCATTGGGCATGGACCTCAGAGTTCTATGGTGGAGATGGAGGAGGGTTGGGCCCTGGGCCCAGGGATCCTGAGGCTGACCGGTATTTCAGAAGTACCCTTTTCAGCCCCCTTATTGCTGGTAGTAGGTGGGGATAGCAAAGGTAGGGAGGGCCGTGGGACAAGCCCCTGGATTGAATGTTTCTGGCCTTCGGCAG
Seq C2 exon
TCTGGGATGTGGCATTGGCTATGGGTATCTACACCGGATCCCAACTCAGCCCCCCAGCTACCACAAGAAGCCACCTGGCACCCCACCACCTTCTGCTCTACCACTTGGTGCCCCACCACCTGATGCTCTACCACCTGGACCCACCCCCGAGGACTCTCCTTCCCTGGAGACAGGTTCCAGGCAGAGTGACTACATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114745-GORASP1:NM_031899:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.193 A=NA C2=0.679
Domain overlap (PFAM):
C1:
PF044959=GRASP55_65=FE(31.4=100)
A:
NA
C2:
PF044959=GRASP55_65=PD(11.7=23.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAGTCTCATGAGGGGAAGC
R:
ACTCTGCCTGGAACCTGTCTC
Band lengths:
296-539
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)