DreINT0014966 @ danRer10
Intron Retention
Gene
ENSDARG00000036104 | MYO1G
Description
myosin IG [Source:HGNC Symbol;Acc:HGNC:13880]
Coordinates
chr19:25125744-25126524:-
Coord C1 exon
chr19:25126358-25126524
Coord A exon
chr19:25125952-25126357
Coord C2 exon
chr19:25125744-25125951
Length
406 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
TATGACGTTTTTATTCTCAGGTA
3' ss Score
9.63
Exon sequences
Seq C1 exon
GAGCCTTACTATGTGCGCTGTATAAAGCCGAATGAGGTGAAGTCTCCCCTGCTGTTTGATGATGGACGCTGTCAGCACCAAGTGGCATATCTGGGACTGCTGGAGAATGTCCGTGTGCGTCGAGCTGGATTTGCCTACCGACAGCCTTATGCACGCTTTCTGCAGAG
Seq A exon
GTGAGATATGTTGCATATGCATTATTATTCATGCAAAAGACATTAGAGGTTACTGCTTCACACATTTTGTTTATTCCAATGCCCTTTTTACTTGAAATAAACGCGAAAAAAGTTAAATAAAATTTAAAAAAATGTAGTTTGTTGTTAAGACAACATTTATTTCAAATTGCAGTACTGTTCAGTACTGGTCAAGTTGGTGGACTAGTCTAGTTTTATACCAACAAAAATAAAACCACATTTATTAAATTACTAGTGCTAGAAATACTCCCTAAACAGTGTCTTATGTGTGAAATGCATCACATTCTCTAAGAATCTGAAATCCAGTTTCAAGCTAAATGGACTAAAGTGCTAATAAATGGTAAATCAGTAATTCATTCATAGTGCAATATGACGTTTTTATTCTCAG
Seq C2 exon
GTACAAGATGACCTGTGAGTACACGTGGCCTAATCACCTGATGAGCACTGATCAGGAGGCTGTGGAGGCCATAGTGAACCAGCATGGCTTTGAGGATGATGTTGCGTACGGCCTCAACAAAATTTTCGTCAGGACCCCTCGCACACTCTTCACCCTGGAGCAAGAGAGAGCCGCGCTCATCCCCATATTAGTGCTGTTCTTACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036104:ENSDART00000142774:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(8.2=100)
A:
NA
C2:
PF0006316=Myosin_head=PD(6.5=62.9),PF149351=TMEM138=PU(16.2=24.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCGCTGTATAAAGCCGAA
R:
CTAATATGGGGATGAGCGCGG
Band lengths:
347-753
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]